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Ruttenberg BI, Adam TC, Duran A, Burkepile DE.  2019.  Identity of coral reef herbivores drives variation in ecological processes over multiple spatial scales. Ecological Applications. 29:e01893.
Burkepile DE, Hay ME.  2010.  Impact of herbivore identity on algal succession and coral growth on a Caribbean reef. PloS one. 5:e8963.
Allgeier JE, Adam TC, Burkepile DE.  2017.  The importance of individual and species-level traits for trophic niches among herbivorous coral reef fishes. Proc. R. Soc. B.
Lemoine NP, Drews WA, Burkepile DE, Parker JD.  2013.  Increased temperature alters feeding behavior of a generalist herbivore. Oikos. 122:1669–1678.
Lemoine NP, Burkepile DE, Parker JD.  2017.  Insect herbivores increase mortality and reduce tree seedling growth of some species in temperate forest canopy gaps. PeerJ. 5:e3102.
Schmitt MH, Stears K, Donovan MK, Burkepile DE, Thompson DI.  2022.  Integrating herbivore assemblages and woody plant cover in an African savanna to reveal how herbivores respond to ecosystem management. Plos one. 17:e0273917.
Duran A, Collado-Vides L, Palma L, Burkepile DE.  2018.  Interactive effects of herbivory and substrate orientation on algal community dynamics on a coral reef. Marine biology. 165:156.
Scott JJ, Adam TC, Duran A, Burkepile DE, Rasher DB.  2020.  Intestinal microbes: an axis of functional diversity among large marine consumers. Proceedings of the Royal Society B. 287:20192367.
Wilkins SP, Blum AJ, Burkepile DE, Rutland TJ, Wierzbicki A, Kelly M, Hamann MT.  2002.  Isolation of an antifreeze peptide from the Antarctic sponge Homaxinella balfourensis. Cellular and Molecular Life Sciences CMLS. 59:2210–2215.