Publications

Found 20 results
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A
Alexandrou MA, Cardinale BJ, Hall JD, Delwiche CF, Fritschie K, Narwani A, Venail PA, Bentlage B, M Pankey S, Oakley TH.  2015.  Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae. Proceedings of the Royal Society B: Biological Sciences. 282:20141745.
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Cadotte MW, Cardinale BJ, Oakley TH.  2008.  Evolutionary history and the effect of biodiversity on plant productivity. Proceedings of the National Academy of Sciences. 105:17012.
Colbourne JK, Pfrender ME, Gilbert D, W Thomas K, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MKumar et al..  2011.  The ecoresponsive genome of Daphnia pulex. Science. 331:555.
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Fritschie KJeffrey, Cardinale BJ, Alexandrou MA, Oakley TH.  2013.  Evolutionary history and the strength of species interactions: testing the phylogenetic limiting similarity hypothesis. Ecology.
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Jackrel SL, Narwani A, Bentlage B, Levine RB, Hietala DC, Savage PE, Oakley TH, Denef VJ, Cardinale BJ.  2018.  Ecological engineering helps maximize function in algal oil production. Applied and environmental microbiology. :AEM–00953.
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Lum KE, Syme AE, Schwab AK, Oakley TH.  2008.  Euphilomedes chupacabra (Ostracoda: Myodocopida: Philomedidae), a new demersal marine species from coastal Puerto Rico with male-biased vespertine swimming activity. Zootaxa. 1684:35–57. (954.14 KB)
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Narwani A, Bentlage B, Alexandrou MA, Fritschie KJ, Delwiche C, Oakley TH, Cardinale BJ.  2017.  Ecological interactions and coexistence are predicted by gene expression similarity in freshwater green algae. Journal of Ecology. 105:580–591.
Narwani A, Alexandrou MA, Oakley TH, Carroll IT, Cardinale BJ.  2013.  Experimental evidence that evolutionary relatedness does not affect the ecological mechanisms of coexistence in freshwater green algae. Ecology Letters. 16:1373–1381. (366.91 KB)
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Oakley TH.  2003.  The eye as a replicating and diverging, modular developmental unit. TRENDS in Ecology and Evolution. 18:623–627.
Oakley T.  2018.  Eyes to See: The Astonishing Variety of Vision in Nature. Nature. 563:182–183.
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Peyer SM, M Pankey S, Oakley TH, McFall-Ngai MJ.  2014.  Eye-specification genes in the bacterial light organ of the bobtail squid Euprymna scolopes and their expression in response to symbiont cues. Mechanisms of development. 131:111-126. (3.54 MB)
Phillips RB, Oakley TH, Davis EL.  1995.  Evidence supporting the paraphyly of Hucho (Salmonidae) based on ribosomal DNA restriction maps. Journal of fish biology. 47:956–961.
Plachetzki DC, Fong CR, Oakley TH.  2010.  The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway. Proceedings of the Royal Society B: Biological Sciences. 277:1963.
Plachetzki DC.  2009.  On the evolution of the animal phototransduction cascades. Ecology Evolution and Marine Biology. PhD:131. (2.56 MB)
Porter ML, Speiser DI, Zaharoff AK, Caldwell RL, Cronin TW, Oakley TH.  2013.  The Evolution of Complexity in the Visual Systems of Stomatopods: Insights from Transcriptomics. Integrative and comparative biology. 53:39–49.
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M Ramirez D, Oakley TH.  2015.  Eye-independent, light-activated chromatophore expansion (LACE) and expression of phototransduction genes in the skin of Octopus bimaculoides. The Journal of experimental biology. 218:1513–1520.
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Sakarya O, Conaco C, Eğecioğlu Ö, Solla SA, Oakley TH, Kosik KS.  2010.  Evolutionary expansion and specialization of the PDZ domains. Molecular biology and evolution. 27:1058–1069.
Speiser DI, Lampe RI, Lovdahl VR, Carrillo-Zazueta B, Rivera AS, Oakley TH.  2013.  Evasion of Predators Contributes to the Maintenance of Male Eyes in Sexually Dimorphic Euphilomedes ostracods (Crustacea). Integrative and comparative biology. 53:78–88. (254.54 KB)
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Tinn O, Oakley TH.  2008.  Erratic rates of molecular evolution and incongruence of fossil and molecular divergence time estimates in Ostracoda (Crustacea). Molecular phylogenetics and evolution. 48:157–167.
Tong D, Rozas NS, Oakley TH, Mitchell J, Colley NJ, McFall-Ngai MJ.  2009.  Evidence for light perception in a bioluminescent organ. Proceedings of the National Academy of Sciences. 106:9836.