Publications
An AluI fragment isolated from lake trout (Salvelinus namaycush), maps to the intergenic spacer region of the rDNA cistron. Gene. 186:7–11.
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1997. Eye-independent, light-activated chromatophore expansion (LACE) and expression of phototransduction genes in the skin of Octopus bimaculoides. The Journal of experimental biology. 218:1513–1520.
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2015. Understanding the dermal light sense in the context of integrative photoreceptor cell biology. Visual neuroscience. 28:265–279. (297.05 KB)
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2011. The last common ancestor of most bilaterian animals possessed at least 9 opsins. Genome biology and evolution. :evw248.
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2016. .
2013.
The Evolution of Complexity in the Visual Systems of Stomatopods: Insights from Transcriptomics. Integrative and comparative biology. 53:39–49.
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2013. The origins of novel protein interactions during animal opsin evolution. PLoS One. 2:e1054.
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2007. New insights into the evolutionary history of photoreceptor cells. Trends in ecology & evolution. 20:465–467.
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2005. Key transitions during the evolution of animal phototransduction: novelty,“tree-thinking,” co-option, and co-duplication. Integrative and Comparative Biology. 47:759–769.
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2007. On the evolution of the animal phototransduction cascades. Ecology Evolution and Marine Biology. PhD:131. (2.56 MB)
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2009. The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway. Proceedings of the Royal Society B: Biological Sciences. 277:1963.
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2010. Cnidocyte discharge is regulated by light and opsin-mediated phototransduction. BMC biology. 10:17.
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2012. Prolific origination of eyes in Cnidaria with co-option of non-visual opsins. Current Biology. 28:2413–2419. (2.06 MB)
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2018. Phylogenetic relationships among the Salmoninae based on nuclear and mitochondrial DNA sequences.. Molecular systematics of fishes. Academic Press, London.
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1997. Evidence supporting the paraphyly of Hucho (Salmonidae) based on ribosomal DNA restriction maps. Journal of fish biology. 47:956–961.
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1995. Eye-specification genes in the bacterial light organ of the bobtail squid Euprymna scolopes and their expression in response to symbiont cues. Mechanisms of development. 131:111-126. (3.54 MB)
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2014. Comparative tests of evolutionary trade-offs in a palinurid lobster acoustic system. Evolution. 57:2082–2100.
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2003. Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid. Proceedings of the National Academy of Sciences.
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2014. Independent contrasts succeed where ancestor reconstruction fails in a known bacteriophage phylogeny. Evolution. 54:397–405.
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2000. Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system. BMC Bioinformatics. 15:230.
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2014. How Complexity Originates: The Evolution of Animal Eyes. Annual Review of Ecology, Evolution, and Systematics. 46 (351.15 KB)
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2015. .
2013. Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement, and Pancrustacean Phylogeny. Molecular biology and evolution. 30:215–233. (1.19 MB)
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2009. Repression and loss of gene expression outpaces activation and gain in recently duplicated fly genes. Proceedings of the National Academy of Sciences. 103:11637.
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2006.