Publications

Found 104 results
Author Title [ Type(Desc)] Year
Journal Article
Speiser DI, Lampe RI, Lovdahl VR, Carrillo-Zazueta B, Rivera AS, Oakley TH.  2013.  Evasion of Predators Contributes to the Maintenance of Male Eyes in Sexually Dimorphic Euphilomedes ostracods (Crustacea). Integrative and comparative biology. 53:78–88. (254.54 KB)
Tong D, Rozas NS, Oakley TH, Mitchell J, Colley NJ, McFall-Ngai MJ.  2009.  Evidence for light perception in a bioluminescent organ. Proceedings of the National Academy of Sciences. 106:9836.
Phillips RB, Oakley TH, Davis EL.  1995.  Evidence supporting the paraphyly of Hucho (Salmonidae) based on ribosomal DNA restriction maps. Journal of fish biology. 47:956–961.
Porter ML, Speiser DI, Zaharoff AK, Caldwell RL, Cronin TW, Oakley TH.  2013.  The Evolution of Complexity in the Visual Systems of Stomatopods: Insights from Transcriptomics. Integrative and comparative biology. 53:39–49.
Plachetzki DC, Fong CR, Oakley TH.  2010.  The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway. Proceedings of the Royal Society B: Biological Sciences. 277:1963.
Sakarya O, Conaco C, Eğecioğlu Ö, Solla SA, Oakley TH, Kosik KS.  2010.  Evolutionary expansion and specialization of the PDZ domains. Molecular biology and evolution. 27:1058–1069.
Cadotte MW, Cardinale BJ, Oakley TH.  2008.  Evolutionary history and the effect of biodiversity on plant productivity. Proceedings of the National Academy of Sciences. 105:17012.
Fritschie KJeffrey, Cardinale BJ, Alexandrou MA, Oakley TH.  2013.  Evolutionary history and the strength of species interactions: testing the phylogenetic limiting similarity hypothesis. Ecology.
Alexandrou MA, Cardinale BJ, Hall JD, Delwiche CF, Fritschie K, Narwani A, Venail PA, Bentlage B, M Pankey S, Oakley TH.  2015.  Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae. Proceedings of the Royal Society B: Biological Sciences. 282:20141745.
Narwani A, Alexandrou MA, Oakley TH, Carroll IT, Cardinale BJ.  2013.  Experimental evidence that evolutionary relatedness does not affect the ecological mechanisms of coexistence in freshwater green algae. Ecology Letters. 16:1373–1381. (366.91 KB)
Oakley TH.  2003.  The eye as a replicating and diverging, modular developmental unit. TRENDS in Ecology and Evolution. 18:623–627.
M Ramirez D, Oakley TH.  2015.  Eye-independent, light-activated chromatophore expansion (LACE) and expression of phototransduction genes in the skin of Octopus bimaculoides. The Journal of experimental biology. 218:1513–1520.
Oakley T.  2018.  Eyes to See: The Astonishing Variety of Vision in Nature. Nature. 563:182–183.
Peyer SM, M Pankey S, Oakley TH, McFall-Ngai MJ.  2014.  Eye-specification genes in the bacterial light organ of the bobtail squid Euprymna scolopes and their expression in response to symbiont cues. Mechanisms of development. 131:111-126. (3.54 MB)
Oakley TH.  2017.  Furcation and fusion: The phylogenetics of evolutionary novelty. Developmental Biology. 431:69-76.
Oakley TH, Plachetzki DC, Rivera AS.  2007.  Furcation, field-splitting, and the evolutionary origins of novelty in arthropod photoreceptors. Arthropod structure & development. 36:386–400.
Rivera A, M Pankey S, Plachetzki D, Villacorta C, Syme A, Serb J, Omilian A, Oakley T.  2010.  Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach. BMC evolutionary biology. 10:123.
Alexandrou MA, Swartz BA, Matzke NJ, Oakley TH.  2013.  Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae. Molecular Phylogenetics and Evolution. 69:514-523. (814.25 KB)
Jeffery NW, Ellis EA, Oakley TH, T Gregory R.  2017.  The Genome Sizes of Ostracod Crustaceans Correlate with Body Size and Evolutionary History, but not Environment. Journal of Heredity. 108:701-706.
Oakley TH, Rivera AS.  2008.  Genomics and the evolutionary origins of nervous system complexity. Current opinion in genetics & development. 18:479–492.
Scientists GIGACommunity.  2014.  The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes. Journal of Heredity. 105:1-18.
Serb JM, Oakley TH.  2005.  Hierarchical phylogenetics as a quantitative analytical framework for evolutionary developmental biology. Bioessays. 27:1158–1166.
Ellis EA, Oakley TH.  2016.  High Rates of Species Accumulation in Animals with Bioluminescent Courtship Displays. Current Biology.  (1.33 MB)
Oakley TH.  2003.  On homology of arthropod compound eyes. Integrative and comparative biology. 43:522–530.
Oakley TH, Speiser DI.  2015.  How Complexity Originates: The Evolution of Animal Eyes. Annual Review of Ecology, Evolution, and Systematics. 46 (351.15 KB)

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