Publications

Found 41 results
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Varney RM, Speiser DI, Cannon JT, Aguilar MA, Eernisse DJ, Oakley TH.  2024.  A morphological basis for path-dependent evolution of visual systems. Science. 383:983–987.
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Oakley T, Alexandrou M, Ngo R, Pankey M, Churchill C, Chen W, Lopker K.  2014.  Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system. BMC Bioinformatics. 15:230.
Oakley T, Alexandrou M, Ngo R, Pankey M, Churchill C, Chen W, Lopker K.  2014.  Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system. BMC Bioinformatics. 15:230.
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Naughton HR, Alexandrou MA, Oakley TH, Cardinale BJ.  2015.  Phylogenetic distance does not predict competition in green algal communities. Ecosphere. 6:art116.
Cadotte MW, T Davies J, Regetz J, Kembel SW, Cleland E, Oakley TH.  2010.  Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. Ecology letters. 13:96–105.
Cadotte MW, T Davies J, Regetz J, Kembel SW, Cleland E, Oakley TH.  2010.  Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. Ecology letters. 13:96–105.
Peniston JH, Ellis EA, Churchill CKC, M Ramirez D, Oakley TH.  2019.  Phylogenetic position of Alternochelata lizardensis Kornicker, 1982 within Rutidermatidae (Ostracoda: Myodocopida), with an investigation into its green coloration. The Journal of Crustacean Biology. 39:559–566.
Picciani N, Kerlin JR, Sierra N, Swafford AJM, M Ramirez D, Roberts NG, Cannon JT, Daly M, Oakley TH.  2018.  Prolific origination of eyes in Cnidaria with co-option of non-visual opsins. Current Biology. 28:2413–2419. (2.06 MB)
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Cunningham CW, Omland KE, Oakley TH.  1998.  Reconstructing ancestral character states: a critical reappraisal. Trends in Ecology & Evolution. 13:361–366. (136.95 KB)
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Hensley NM, Ellis EA, Leung NY, Coupart J, Mikhailovsky A, Taketa DA, Tessler M, Gruber DF, De Tomaso AW, Mitani Y et al..  2021.  Selection, drift, and constraint in cypridinid luciferases and the diversification of bioluminescent signals in sea fireflies. Molecular Ecology. 30:1864–1879.
Venail PA, Alexandrou MA, Oakley TH, Cardinale BJ.  2013.  Shared ancestry influences community stability by altering competitive interactions: evidence from a laboratory microcosm experiment using freshwater green algae. Proceedings of the Royal Society B: Biological Sciences. 280 (527.51 KB)
Belcaid M, Casaburi G, McAnulty SJ, Schmidbaur H, Suria AM, Moriano-Gutierrez S, M Pankey S, Oakley TH, Kremer N, Koch EJ et al..  2019.  Symbiotic organs shaped by distinct modes of genome evolution in cephalopods. Proceedings of the National Academy of Sciences. :201817322.
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CHURCHILL CELIAKC, Ellis EA, Pique A, Oakley TH.  2014.  Two new sympatric species of Eusarsiella (Ostracoda: Myodocopida: Sarsiellidae) from the Florida Keys with a morphological phylogeny of Sarsiellinae. Zootaxa. 3802:444–458.
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Cadotte MW, Cavender-Bares J, Tilman D, Oakley TH.  2009.  Using phylogenetic, functional and trait diversity to understand patterns of plant community productivity. PLoS One. 4:e5695.
Cadotte MW, Cavender-Bares J, Tilman D, Oakley TH.  2009.  Using phylogenetic, functional and trait diversity to understand patterns of plant community productivity. PLoS One. 4:e5695.
Speiser DI, M Pankey S, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR et al..  2014.  Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. BMC bioinformatics. 15:350.

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