Publications

Found 85 results
Author Title [ Type(Asc)] Year
Filters: Author is Oakley, Todd H  [Clear All Filters]
Journal Article
Oakley TH, Rivera AS.  2008.  Genomics and the evolutionary origins of nervous system complexity. Current opinion in genetics & development. 18:479–492.
Jeffery NW, Ellis EA, Oakley TH, T Gregory R.  2017.  The Genome Sizes of Ostracod Crustaceans Correlate with Body Size and Evolutionary History, but not Environment. Journal of Heredity. 108:701-706.
Oakley TH, Plachetzki DC, Rivera AS.  2007.  Furcation, field-splitting, and the evolutionary origins of novelty in arthropod photoreceptors. Arthropod structure & development. 36:386–400.
Peyer SM, M Pankey S, Oakley TH, McFall-Ngai MJ.  2014.  Eye-specification genes in the bacterial light organ of the bobtail squid Euprymna scolopes and their expression in response to symbiont cues. Mechanisms of development. 131:111-126. (3.54 MB)
M Ramirez D, Oakley TH.  2015.  Eye-independent, light-activated chromatophore expansion (LACE) and expression of phototransduction genes in the skin of Octopus bimaculoides. The Journal of experimental biology. 218:1513–1520.
Oakley TH.  2003.  The eye as a replicating and diverging, modular developmental unit. TRENDS in Ecology and Evolution. 18:623–627.
Garm A, Svaerke J-E, Pontieri D, Oakley TH.  2022.  Expression of Opsins of the Box Jellyfish Tripedalia cystophora Reveals the First Photopigment in Cnidarian Ocelli and Supports the Presence of Photoisomerases. Frontiers in Neuroanatomy. 16:916510.
Oakley TH.  2019.  Evolving witnesses of changing environments: An introduction to the 18th International Symposium on Ostracoda. Journal of Crustacean Biology. 39:199–201.
Alexandrou MA, Cardinale BJ, Hall JD, Delwiche CF, Fritschie K, Narwani A, Venail PA, Bentlage B, M Pankey S, Oakley TH.  2015.  Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae. Proceedings of the Royal Society B: Biological Sciences. 282:20141745.
Fritschie KJeffrey, Cardinale BJ, Alexandrou MA, Oakley TH.  2013.  Evolutionary history and the strength of species interactions: testing the phylogenetic limiting similarity hypothesis. Ecology.
Cadotte MW, Cardinale BJ, Oakley TH.  2008.  Evolutionary history and the effect of biodiversity on plant productivity. Proceedings of the National Academy of Sciences. 105:17012.
Plachetzki DC, Fong CR, Oakley TH.  2010.  The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway. Proceedings of the Royal Society B: Biological Sciences. 277:1963.
Porter ML, Speiser DI, Zaharoff AK, Caldwell RL, Cronin TW, Oakley TH.  2013.  The Evolution of Complexity in the Visual Systems of Stomatopods: Insights from Transcriptomics. Integrative and comparative biology. 53:39–49.
Tong D, Rozas NS, Oakley TH, Mitchell J, Colley NJ, McFall-Ngai MJ.  2009.  Evidence for light perception in a bioluminescent organ. Proceedings of the National Academy of Sciences. 106:9836.
Speiser DI, Lampe RI, Lovdahl VR, Carrillo-Zazueta B, Rivera AS, Oakley TH.  2013.  Evasion of Predators Contributes to the Maintenance of Male Eyes in Sexually Dimorphic Euphilomedes ostracods (Crustacea). Integrative and comparative biology. 53:78–88. (254.54 KB)
Lum KE, Syme AE, Schwab AK, Oakley TH.  2008.  Euphilomedes chupacabra (Ostracoda: Myodocopida: Philomedidae), a new demersal marine species from coastal Puerto Rico with male-biased vespertine swimming activity. Zootaxa. 1684:35–57. (954.14 KB)
Tinn O, Oakley TH.  2008.  Erratic rates of molecular evolution and incongruence of fossil and molecular divergence time estimates in Ostracoda (Crustacea). Molecular phylogenetics and evolution. 48:157–167.
Colbourne JK, Pfrender ME, Gilbert D, W Thomas K, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MKumar et al..  2011.  The ecoresponsive genome of Daphnia pulex. Science. 331:555.
Narwani A, Bentlage B, Alexandrou MA, Fritschie KJ, Delwiche C, Oakley TH, Cardinale BJ.  2017.  Ecological interactions and coexistence are predicted by gene expression similarity in freshwater green algae. Journal of Ecology. 105:580–591.
Jackrel SL, Narwani A, Bentlage B, Levine RB, Hietala DC, Savage PE, Oakley TH, Denef VJ, Cardinale BJ.  2018.  Ecological engineering helps maximize function in algal oil production. Applied and environmental microbiology. :AEM–00953.
Henze MJ, Oakley TH.  2015.  The dynamic evolutionary history of pancrustacean eyes and opsins. Integrative and Comparative Biology. :icv100. (5.07 MB)
Syme AE, Oakley TH.  2012.  Dispersal between shallow and abyssal seas and evolutionary loss and regain of compound eyes in cylindroleberidid ostracods: conflicting conclusions from different comparative methods. Systematic biology. 61:314–336. (1.27 MB)
Oakley TH, Huber DR.  2004.  Differential expression of duplicated opsin genes in two eyetypes of ostracod crustaceans. Journal of molecular evolution. 59:239–249.
Drábková M, Kocot KM, Halanych KM, Oakley TH, Moroz LL, Cannon JT, Kuris A, Garcia-Vedrenne AElisa, M Pankey S, Ellis EA.  2022.  Different phylogenomic methods support monophyly of enigmatic ‘Mesozoa’(Dicyemida+ Orthonectida, Lophotrochozoa). Proceedings of the Royal Society B. 289:20220683.
Vöcking O, Macias-Muñoz A, Jaeger SJ, Oakley TH.  2022.  Deep diversity: extensive variation in the components of complex visual systems across animals. Cells. 11:3966.

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