Publications

Found 119 results
Author Title [ Type(Desc)] Year
Journal Article
Setterquist RA, G Smith K, Oakley TH, Lee Y-H, Fox GE.  1996.  Sequence, overproduction and purification of Vibrio proteolyticus ribosomal protein L 18 for in vitro and in vivo studies. Gene. 183:237–242.
Ellis EA, Goodheart JA, Hensley NM, González VL, Reda NJ, Rivers TJ, Morin JG, Torres E, Gerrish GA, Oakley TH.  2023.  Sexual signals persist over deep time: ancient co-option of bioluminescence for courtship displays in cypridinid ostracods. Systematic Biology. 72:264–274.
Venail PA, Alexandrou MA, Oakley TH, Cardinale BJ.  2013.  Shared ancestry influences community stability by altering competitive interactions: evidence from a laboratory microcosm experiment using freshwater green algae. Proceedings of the Royal Society B: Biological Sciences. 280 (527.51 KB)
Venail P, Gross K, Oakley TH, Narwani A, Allan E, Flombaum P, Isbell F, Joshi J, Reich PB, Tilman D et al..  2015.  Species richness, but not phylogenetic diversity, influences community biomass production and temporal stability in a re-examination of 16 grassland biodiversity studies. Functional Ecology.
Belcaid M, Casaburi G, McAnulty SJ, Schmidbaur H, Suria AM, Moriano-Gutierrez S, M Pankey S, Oakley TH, Kremer N, Koch EJ et al..  2019.  Symbiotic organs shaped by distinct modes of genome evolution in cephalopods. Proceedings of the National Academy of Sciences. :201817322.
Oakley TH.  2007.  Today's multiple choice exam:(a) gene duplication;(b) structural mutation;(c) co-option;(d) regulatory mutation;(e) all of the above. Evolution & Development. 9:523–524.
Stahl BA, Gross JB, Speiser DI, Oakley TH, Patel NH, Gould DB, Protas ME.  2015.  A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus. PloS one. 10:e0140484.
CHURCHILL CELIAKC, Ellis EA, Pique A, Oakley TH.  2014.  Two new sympatric species of Eusarsiella (Ostracoda: Myodocopida: Sarsiellidae) from the Florida Keys with a morphological phylogeny of Sarsiellinae. Zootaxa. 3802:444–458.
Larusso ND, Ruttenberg BE, Singh AK, Oakley TH.  2008.  Type II opsins: evolutionary origin by internal domain duplication? Journal of molecular evolution. 66:417–423. (321.78 KB)
M Ramirez D, Speiser DI, M Pankey S, Oakley TH.  2011.  Understanding the dermal light sense in the context of integrative photoreceptor cell biology. Visual neuroscience. 28:265–279. (297.05 KB)
Cadotte MW, Cavender-Bares J, Tilman D, Oakley TH.  2009.  Using phylogenetic, functional and trait diversity to understand patterns of plant community productivity. PLoS One. 4:e5695.
Speiser DI, M Pankey S, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR et al..  2014.  Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. BMC bioinformatics. 15:350.
Thesis
Oakley TH.  1996.  Duplicated growth hormone genes from a tetraploid family of fishes: DNA sequence evolution and implications for salmonid systematics.
Plachetzki DC.  2009.  On the evolution of the animal phototransduction cascades. Ecology Evolution and Marine Biology. PhD:131. (2.56 MB)
Gaiti F.  2011.  Investigations on the G-protein involved in Cnidarian phototransduction. Marine Biology. MS:58. (830.99 KB)
Jindrich K.  2011.  Light influence on nematocyst firing in the sea anemone Haliplanella luciae. Lund Vision Group and UCSB EEMB. MS:22. (432.09 KB)
Oakley TH.  2001.  Phylogenetic reconstruction of ancestral character states.
Lampe RI.  2011.  Support for the dimorphic niche hypothesis: Natural selection drives sexual eye dimorphism in ostracods. Ecology Evolution and Marine Biology. MA:42. (625.01 KB)
Lee C.  2005.  Testing Trait Evolution Models on Phylogenetic Trees. Computer Science. MS:34. (834.6 KB)

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