Publications

Found 37 results
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Speiser DI, M Pankey S, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR et al..  2014.  Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. BMC bioinformatics. 15:350.
Cadotte MW, Cavender-Bares J, Tilman D, Oakley TH.  2009.  Using phylogenetic, functional and trait diversity to understand patterns of plant community productivity. PLoS One. 4:e5695.
Cadotte MW, Cavender-Bares J, Tilman D, Oakley TH.  2009.  Using phylogenetic, functional and trait diversity to understand patterns of plant community productivity. PLoS One. 4:e5695.
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CHURCHILL CELIAKC, Ellis EA, Pique A, Oakley TH.  2014.  Two new sympatric species of Eusarsiella (Ostracoda: Myodocopida: Sarsiellidae) from the Florida Keys with a morphological phylogeny of Sarsiellinae. Zootaxa. 3802:444–458.
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Belcaid M, Casaburi G, McAnulty SJ, Schmidbaur H, Suria AM, Moriano-Gutierrez S, M Pankey S, Oakley TH, Kremer N, Koch EJ et al..  2019.  Symbiotic organs shaped by distinct modes of genome evolution in cephalopods. Proceedings of the National Academy of Sciences. :201817322.
Venail PA, Alexandrou MA, Oakley TH, Cardinale BJ.  2013.  Shared ancestry influences community stability by altering competitive interactions: evidence from a laboratory microcosm experiment using freshwater green algae. Proceedings of the Royal Society B: Biological Sciences. 280 (527.51 KB)
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Cunningham CW, Omland KE, Oakley TH.  1998.  Reconstructing ancestral character states: a critical reappraisal. Trends in Ecology & Evolution. 13:361–366. (136.95 KB)
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Picciani N, Kerlin JR, Sierra N, Swafford AJM, M Ramirez D, Roberts NG, Cannon JT, Daly M, Oakley TH.  2018.  Prolific origination of eyes in Cnidaria with co-option of non-visual opsins. Current Biology. 28:2413–2419. (2.06 MB)
Cadotte MW, T Davies J, Regetz J, Kembel SW, Cleland E, Oakley TH.  2010.  Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. Ecology letters. 13:96–105.
Cadotte MW, T Davies J, Regetz J, Kembel SW, Cleland E, Oakley TH.  2010.  Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. Ecology letters. 13:96–105.
Naughton HR, Alexandrou MA, Oakley TH, Cardinale BJ.  2015.  Phylogenetic distance does not predict competition in green algal communities. Ecosphere. 6:art116.
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Oakley T, Alexandrou M, Ngo R, Pankey M, Churchill C, Chen W, Lopker K.  2014.  Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system. BMC Bioinformatics. 15:230.
Oakley T, Alexandrou M, Ngo R, Pankey M, Churchill C, Chen W, Lopker K.  2014.  Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system. BMC Bioinformatics. 15:230.
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Oakley TH, Cunningham CW.  2002.  Molecular phylogenetic evidence for the independent evolutionary origin of an arthropod compound eye. Proceedings of the National Academy of Sciences. 99:1426.
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Venail PA, Narwani A, Fritschie K, Alexandrou MA, Oakley TH, Cardinale BJ.  2014.  The influence of phylogenetic relatedness on species interactions among freshwater green algae in a mesocosm experiment. Journal of Ecology. :n/a–n/a.
Oakley TH, Cunningham CW.  2000.  Independent contrasts succeed where ancestor reconstruction fails in a known bacteriophage phylogeny. Evolution. 54:397–405.
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Narwani A, Alexandrou MA, Oakley TH, Carroll IT, Cardinale BJ.  2013.  Experimental evidence that evolutionary relatedness does not affect the ecological mechanisms of coexistence in freshwater green algae. Ecology Letters. 16:1373–1381. (366.91 KB)
Narwani A, Alexandrou MA, Oakley TH, Carroll IT, Cardinale BJ.  2013.  Experimental evidence that evolutionary relatedness does not affect the ecological mechanisms of coexistence in freshwater green algae. Ecology Letters. 16:1373–1381. (366.91 KB)
Alexandrou MA, Cardinale BJ, Hall JD, Delwiche CF, Fritschie K, Narwani A, Venail PA, Bentlage B, M Pankey S, Oakley TH.  2015.  Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae. Proceedings of the Royal Society B: Biological Sciences. 282:20141745.
Fritschie KJeffrey, Cardinale BJ, Alexandrou MA, Oakley TH.  2013.  Evolutionary history and the strength of species interactions: testing the phylogenetic limiting similarity hypothesis. Ecology.
Cadotte MW, Cardinale BJ, Oakley TH.  2008.  Evolutionary history and the effect of biodiversity on plant productivity. Proceedings of the National Academy of Sciences. 105:17012.
Cadotte MW, Cardinale BJ, Oakley TH.  2008.  Evolutionary history and the effect of biodiversity on plant productivity. Proceedings of the National Academy of Sciences. 105:17012.
Sakarya O, Conaco C, Eğecioğlu Ö, Solla SA, Oakley TH, Kosik KS.  2010.  Evolutionary expansion and specialization of the PDZ domains. Molecular biology and evolution. 27:1058–1069.
Porter ML, Speiser DI, Zaharoff AK, Caldwell RL, Cronin TW, Oakley TH.  2013.  The Evolution of Complexity in the Visual Systems of Stomatopods: Insights from Transcriptomics. Integrative and comparative biology. 53:39–49.
Porter ML, Speiser DI, Zaharoff AK, Caldwell RL, Cronin TW, Oakley TH.  2013.  The Evolution of Complexity in the Visual Systems of Stomatopods: Insights from Transcriptomics. Integrative and comparative biology. 53:39–49.

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