Publications

Found 25 results
Author Title [ Type(Desc)] Year
Filters: First Letter Of Last Name is G  [Clear All Filters]
Journal Article
Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier MEA, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U et al..  2010.  The Amphimedon queenslandica genome and the evolution of animal complexity. Nature. 466:720–726.
Hensley NM, Rivers TJ, Gerrish GA, Saha R, Oakley TH.  2023.  Collective synchrony of mating signals modulated by ecological cues and social signals in bioluminescent sea fireflies. Proceedings of the Royal Society B. 290:20232311.
Oakley TH, Gu Z, Abouheif E, Patel NH, Li W-H.  2005.  Comparative methods for the analysis of gene-expression evolution: an example using yeast functional genomic data. Molecular biology and evolution. 22:40–50.
Drábková M, Kocot KM, Halanych KM, Oakley TH, Moroz LL, Cannon JT, Kuris A, Garcia-Vedrenne AElisa, M Pankey S, Ellis EA.  2022.  Different phylogenomic methods support monophyly of enigmatic ‘Mesozoa’(Dicyemida+ Orthonectida, Lophotrochozoa). Proceedings of the Royal Society B. 289:20220683.
Colbourne JK, Pfrender ME, Gilbert D, W Thomas K, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MKumar et al..  2011.  The ecoresponsive genome of Daphnia pulex. Science. 331:555.
Garm A, Svaerke J-E, Pontieri D, Oakley TH.  2022.  Expression of Opsins of the Box Jellyfish Tripedalia cystophora Reveals the First Photopigment in Cnidarian Ocelli and Supports the Presence of Photoisomerases. Frontiers in Neuroanatomy. 16:916510.
Jeffery NW, Ellis EA, Oakley TH, T Gregory R.  2017.  The Genome Sizes of Ostracod Crustaceans Correlate with Body Size and Evolutionary History, but not Environment. Journal of Heredity. 108:701-706.
Goodheart JA, Minsky G, Brynjegard-Bialik MN, Drummond MS, J Munoz D, Fallon TR, Schultz DT, Weng J-K, Torres E, Oakley TH.  2020.  Laboratory culture of the California Sea Firefly Vargula tsujii (Ostracoda: Cypridinidae): Developing a model system for the evolution of marine bioluminescence. Scientific Reports. 10:10443.
Picciani N, Kerlin JR, Jindrich K, Hensley NM, Gold DA, Oakley TH.  2021.  Light modulated cnidocyte discharge predates the origins of eyes in Cnidaria. Ecology and evolution. 11:3933–3940.
Tanner AR, Fuchs D, Winkelmann IE, M Gilbert TP, M Pankey S, Ribeiro ÂM, Kocot KM, Halanych KM, Oakley TH, da Fonseca RR et al..  2017.  Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution. Proc. R. Soc. B.
Gould RM, Oakley T, Goldstone JV, Dugas JC, Brady ST, Gow A.  2008.  Myelin sheaths are formed with proteins that originated in vertebrate lineages. Neuron Glia Biology. 4:137–152.
Gould RM, Oakley T, Goldstone JV, Dugas JC, Brady ST, Gow A.  2008.  Myelin sheaths are formed with proteins that originated in vertebrate lineages. Neuron Glia Biology. 4:137–152.
Gould RM, Oakley T, Goldstone JV, Dugas JC, Brady ST, Gow A.  2008.  Myelin sheaths are formed with proteins that originated in vertebrate lineages. Neuron Glia Biology. 4:137–152.
Bielecki J, Zaharoff AK, Leung NY, Garm A, Oakley TH.  2014.  Ocular and Extraocular Expression of Opsins in the Rhopalium of Tripedalia cystophora (Cnidaria: Cubozoa)). Plos One. 9(6)
Hensley NM, Ellis EA, Gerrish GA, Torres E, Frawley JP, Oakley TH, Rivers TJ.  2019.  Phenotypic evolution shaped by current enzyme function in the bioluminescent courtship signals of sea fireflies. Proceedings of the Royal Society B. 286:20182621.
Moran P, Reed KM, Pérez J, Oakley TH, Phillips RB, Garcia-Vazquez E, Pendas AM.  1997.  Physical localization and characterization of the BglI element in the genomes of Atlantic salmon (Salmo salar L.) and brown trout (S. trutta L.). Gene. 194:9–18.
Hensley NM, Ellis EA, Leung NY, Coupart J, Mikhailovsky A, Taketa DA, Tessler M, Gruber DF, De Tomaso AW, Mitani Y et al..  2021.  Selection, drift, and constraint in cypridinid luciferases and the diversification of bioluminescent signals in sea fireflies. Molecular Ecology. 30:1864–1879.
Ellis EA, Goodheart JA, Hensley NM, González VL, Reda NJ, Rivers TJ, Morin JG, Torres E, Gerrish GA, Oakley TH.  2023.  Sexual signals persist over deep time: ancient co-option of bioluminescence for courtship displays in cypridinid ostracods. Systematic Biology. 72:264–274.
Ellis EA, Goodheart JA, Hensley NM, González VL, Reda NJ, Rivers TJ, Morin JG, Torres E, Gerrish GA, Oakley TH.  2023.  Sexual signals persist over deep time: ancient co-option of bioluminescence for courtship displays in cypridinid ostracods. Systematic Biology. 72:264–274.
Ellis EA, Goodheart JA, Hensley NM, González VL, Reda NJ, Rivers TJ, Morin JG, Torres E, Gerrish GA, Oakley TH.  2023.  Sexual signals persist over deep time: ancient co-option of bioluminescence for courtship displays in cypridinid ostracods. Systematic Biology. 72:264–274.
Venail P, Gross K, Oakley TH, Narwani A, Allan E, Flombaum P, Isbell F, Joshi J, Reich PB, Tilman D et al..  2015.  Species richness, but not phylogenetic diversity, influences community biomass production and temporal stability in a re-examination of 16 grassland biodiversity studies. Functional Ecology.
Stahl BA, Gross JB, Speiser DI, Oakley TH, Patel NH, Gould DB, Protas ME.  2015.  A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus. PloS one. 10:e0140484.
Stahl BA, Gross JB, Speiser DI, Oakley TH, Patel NH, Gould DB, Protas ME.  2015.  A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus. PloS one. 10:e0140484.
Speiser DI, M Pankey S, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR et al..  2014.  Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. BMC bioinformatics. 15:350.
Thesis
Gaiti F.  2011.  Investigations on the G-protein involved in Cnidarian phototransduction. Marine Biology. MS:58. (830.99 KB)