Publications
Found 42 results
Author Title [ Type] Year Filters: First Letter Of Last Name is P [Clear All Filters]
On the evolution of the animal phototransduction cascades. Ecology Evolution and Marine Biology. PhD:131. (2.56 MB)
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2009. Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. BMC bioinformatics. 15:350.
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2014. Understanding the dermal light sense in the context of integrative photoreceptor cell biology. Visual neuroscience. 28:265–279. (297.05 KB)
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2011. Two new sympatric species of Eusarsiella (Ostracoda: Myodocopida: Sarsiellidae) from the Florida Keys with a morphological phylogeny of Sarsiellinae. Zootaxa. 3802:444–458.
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2014. A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus. PloS one. 10:e0140484.
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2015. A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus. PloS one. 10:e0140484.
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2015. Symbiotic organs shaped by distinct modes of genome evolution in cephalopods. Proceedings of the National Academy of Sciences. :201817322.
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2019. Prolific origination of eyes in Cnidaria with co-option of non-visual opsins. Current Biology. 28:2413–2419. (2.06 MB)
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2018. Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid. Proceedings of the National Academy of Sciences.
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2014. Physical localization and characterization of the BglI element in the genomes of Atlantic salmon (Salmo salar L.) and brown trout (S. trutta L.). Gene. 194:9–18.
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1997. Physical localization and characterization of the BglI element in the genomes of Atlantic salmon (Salmo salar L.) and brown trout (S. trutta L.). Gene. 194:9–18.
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1997. Physical localization and characterization of the BglI element in the genomes of Atlantic salmon (Salmo salar L.) and brown trout (S. trutta L.). Gene. 194:9–18.
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1997. Phylogeny of salmonine fishes based on growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa. Molecular Phylogenetics and Evolution. 11:381–393.
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1999. Phylogenetic analysis of Pacific salmon (genus Oncorhynchus) using nuclear and mitochondrial DNA sequences. Canadian Journal of Fisheries and Aquatic Sciences. 54:1865–1872.
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1997. Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system. BMC Bioinformatics. 15:230.
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2014. The origins of novel protein interactions during animal opsin evolution. PLoS One. 2:e1054.
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2007. Opening the “black box”: the genetic and biochemical basis of eye evolution. Evolution: Education and Outreach. 1:390–402. (342.38 KB)
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2008. Occurrence of Hemocyanin in Ostracod Crustaceans. Journal of Molecular Evolution. :1–9. (1.42 MB)
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2014. New insights into the evolutionary history of photoreceptor cells. Trends in ecology & evolution. 20:465–467.
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2005. A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment. BMC Evolutionary Biology. 12:129.
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2012. Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution. Proc. R. Soc. B.
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2017. The last common ancestor of most bilaterian animals possessed at least 9 opsins. Genome biology and evolution. :evw248.
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2016. The last common ancestor of most bilaterian animals possessed at least 9 opsins. Genome biology and evolution. :evw248.
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2016. Key transitions during the evolution of animal phototransduction: novelty,“tree-thinking,” co-option, and co-duplication. Integrative and Comparative Biology. 47:759–769.
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2007. Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach. BMC evolutionary biology. 10:123.
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2010.