Publications

Found 37 results
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2019
Belcaid M, Casaburi G, McAnulty SJ, Schmidbaur H, Suria AM, Moriano-Gutierrez S, M Pankey S, Oakley TH, Kremer N, Koch EJ et al..  2019.  Symbiotic organs shaped by distinct modes of genome evolution in cephalopods. Proceedings of the National Academy of Sciences. :201817322.
2018
Jackrel SL, Narwani A, Bentlage B, Levine RB, Hietala DC, Savage PE, Oakley TH, Denef VJ, Cardinale BJ.  2018.  Ecological engineering helps maximize function in algal oil production. Applied and environmental microbiology. :AEM–00953.
Picciani N, Kerlin JR, Sierra N, Swafford AJM, M Ramirez D, Roberts NG, Cannon JT, Daly M, Oakley TH.  2018.  Prolific origination of eyes in Cnidaria with co-option of non-visual opsins. Current Biology. 28:2413–2419. (2.06 MB)
2017
Cohen AC, Oakley TH.  2017.  Collecting and processing marine ostracods. Journal of Crustacean Biology. 37:347-352.
Narwani A, Bentlage B, Alexandrou MA, Fritschie KJ, Delwiche C, Oakley TH, Cardinale BJ.  2017.  Ecological interactions and coexistence are predicted by gene expression similarity in freshwater green algae. Journal of Ecology. 105:580–591.
2015
Narwani A, Alexandrou MA, Herrin J, Vouaux A, Zhou C, Oakley TH, Cardinale BJ.  2015.  Common Ancestry Is a Poor Predictor of Competitive Traits in Freshwater Green Algae. PloS one. 10:e0137085.
Alexandrou MA, Cardinale BJ, Hall JD, Delwiche CF, Fritschie K, Narwani A, Venail PA, Bentlage B, M Pankey S, Oakley TH.  2015.  Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae. Proceedings of the Royal Society B: Biological Sciences. 282:20141745.
Naughton HR, Alexandrou MA, Oakley TH, Cardinale BJ.  2015.  Phylogenetic distance does not predict competition in green algal communities. Ecosphere. 6:art116.
2014
Venail PA, Narwani A, Fritschie K, Alexandrou MA, Oakley TH, Cardinale BJ.  2014.  The influence of phylogenetic relatedness on species interactions among freshwater green algae in a mesocosm experiment. Journal of Ecology. :n/a–n/a.
Oakley T, Alexandrou M, Ngo R, Pankey M, Churchill C, Chen W, Lopker K.  2014.  Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system. BMC Bioinformatics. 15:230.
Oakley T, Alexandrou M, Ngo R, Pankey M, Churchill C, Chen W, Lopker K.  2014.  Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system. BMC Bioinformatics. 15:230.
CHURCHILL CELIAKC, Ellis EA, Pique A, Oakley TH.  2014.  Two new sympatric species of Eusarsiella (Ostracoda: Myodocopida: Sarsiellidae) from the Florida Keys with a morphological phylogeny of Sarsiellinae. Zootaxa. 3802:444–458.
Speiser DI, M Pankey S, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR et al..  2014.  Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. BMC bioinformatics. 15:350.
2013
Speiser DI, Lampe RI, Lovdahl VR, Carrillo-Zazueta B, Rivera AS, Oakley TH.  2013.  DATA FROM: Evasion of predators contributes to the maintenance of male eyes in sexually dimorphic Euphilomedes ostracods (Crustacea).
Porter ML, Speiser DI, Zaharoff AK, Caldwell RL, Cronin TW, Oakley TH.  2013.  DATA FROM The evolution of complexity in the visual systems of stomatopods: insights from transcriptomics.
Porter ML, Speiser DI, Zaharoff AK, Caldwell RL, Cronin TW, Oakley TH.  2013.  DATA FROM The evolution of complexity in the visual systems of stomatopods: insights from transcriptomics.
Speiser DI, Lampe RI, Lovdahl VR, Carrillo-Zazueta B, Rivera AS, Oakley TH.  2013.  Evasion of Predators Contributes to the Maintenance of Male Eyes in Sexually Dimorphic Euphilomedes ostracods (Crustacea). Integrative and comparative biology. 53:78–88. (254.54 KB)
Porter ML, Speiser DI, Zaharoff AK, Caldwell RL, Cronin TW, Oakley TH.  2013.  The Evolution of Complexity in the Visual Systems of Stomatopods: Insights from Transcriptomics. Integrative and comparative biology. 53:39–49.
Porter ML, Speiser DI, Zaharoff AK, Caldwell RL, Cronin TW, Oakley TH.  2013.  The Evolution of Complexity in the Visual Systems of Stomatopods: Insights from Transcriptomics. Integrative and comparative biology. 53:39–49.
Fritschie KJeffrey, Cardinale BJ, Alexandrou MA, Oakley TH.  2013.  Evolutionary history and the strength of species interactions: testing the phylogenetic limiting similarity hypothesis. Ecology.
Narwani A, Alexandrou MA, Oakley TH, Carroll IT, Cardinale BJ.  2013.  Experimental evidence that evolutionary relatedness does not affect the ecological mechanisms of coexistence in freshwater green algae. Ecology Letters. 16:1373–1381. (366.91 KB)
Narwani A, Alexandrou MA, Oakley TH, Carroll IT, Cardinale BJ.  2013.  Experimental evidence that evolutionary relatedness does not affect the ecological mechanisms of coexistence in freshwater green algae. Ecology Letters. 16:1373–1381. (366.91 KB)
Venail PA, Alexandrou MA, Oakley TH, Cardinale BJ.  2013.  Shared ancestry influences community stability by altering competitive interactions: evidence from a laboratory microcosm experiment using freshwater green algae. Proceedings of the Royal Society B: Biological Sciences. 280 (527.51 KB)
2011
Colbourne JK, Pfrender ME, Gilbert D, W Thomas K, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MKumar et al..  2011.  The ecoresponsive genome of Daphnia pulex. Science. 331:555.
2010
Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier MEA, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U et al..  2010.  The Amphimedon queenslandica genome and the evolution of animal complexity. Nature. 466:720–726.

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