Publications

Found 119 results
Author Title Type [ Year(Asc)]
2005
Lee C.  2005.  Testing Trait Evolution Models on Phylogenetic Trees. Computer Science. MS:34. (834.6 KB)
2004
Oakley TH, Huber DR.  2004.  Differential expression of duplicated opsin genes in two eyetypes of ostracod crustaceans. Journal of molecular evolution. 59:239–249.
Wang D, Oakley T, Mower J, Shimmin LC, Yim S, Honeycutt RL, Tsao H, Li W-H.  2004.  Molecular evolution of bat color vision genes. Molecular biology and evolution. 21:295–302.
2003
Patek SN, Oakley TH.  2003.  Comparative tests of evolutionary trade-offs in a palinurid lobster acoustic system. Evolution. 57:2082–2100.
Oakley TH.  2003.  The eye as a replicating and diverging, modular developmental unit. TRENDS in Ecology and Evolution. 18:623–627.
Oakley TH.  2003.  On homology of arthropod compound eyes. Integrative and comparative biology. 43:522–530.
Oakley TH.  2003.  Maximum likelihood models of trait evolution. Comments on Theoretical Biology. 8:609–625.
2002
Oakley TH, Cunningham CW.  2002.  Molecular phylogenetic evidence for the independent evolutionary origin of an arthropod compound eye. Proceedings of the National Academy of Sciences. 99:1426.
2001
Oakley TH.  2001.  Phylogenetic reconstruction of ancestral character states.
2000
Oakley TH, Cunningham CW.  2000.  Independent contrasts succeed where ancestor reconstruction fails in a known bacteriophage phylogeny. Evolution. 54:397–405.
1999
Oakley TH, Phillips RB.  1999.  Phylogeny of salmonine fishes based on growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa. Molecular Phylogenetics and Evolution. 11:381–393.
1998
Cunningham CW, Omland KE, Oakley TH.  1998.  Reconstructing ancestral character states: a critical reappraisal. Trends in Ecology & Evolution. 13:361–366. (136.95 KB)
1997
Reed KM, Oakley TH, Phillips RB.  1997.  An AluI fragment isolated from lake trout (Salvelinus namaycush), maps to the intergenic spacer region of the rDNA cistron. Gene. 186:7–11.
Domanico MJ, Phillips RB, Oakley TH.  1997.  Phylogenetic analysis of Pacific salmon (genus Oncorhynchus) using nuclear and mitochondrial DNA sequences. Canadian Journal of Fisheries and Aquatic Sciences. 54:1865–1872.
Phillips RB, Oakley TH, Kocher TD.  1997.  Phylogenetic relationships among the Salmoninae based on nuclear and mitochondrial DNA sequences.. Molecular systematics of fishes. Academic Press, London.
Moran P, Reed KM, Pérez J, Oakley TH, Phillips RB, Garcia-Vazquez E, Pendas AM.  1997.  Physical localization and characterization of the BglI element in the genomes of Atlantic salmon (Salmo salar L.) and brown trout (S. trutta L.). Gene. 194:9–18.
1996
Oakley TH.  1996.  Duplicated growth hormone genes from a tetraploid family of fishes: DNA sequence evolution and implications for salmonid systematics.
Setterquist RA, G Smith K, Oakley TH, Lee Y-H, Fox GE.  1996.  Sequence, overproduction and purification of Vibrio proteolyticus ribosomal protein L 18 for in vitro and in vivo studies. Gene. 183:237–242.
1995
Phillips RB, Oakley TH, Davis EL.  1995.  Evidence supporting the paraphyly of Hucho (Salmonidae) based on ribosomal DNA restriction maps. Journal of fish biology. 47:956–961.

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