Publications

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Oakley TH.  2003.  Maximum likelihood models of trait evolution. Comments on Theoretical Biology. 8:609–625.
Tanner AR, Fuchs D, Winkelmann IE, M Gilbert TP, M Pankey S, Ribeiro ÂM, Kocot KM, Halanych KM, Oakley TH, da Fonseca RR et al..  2017.  Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution. Proc. R. Soc. B.
Wang D, Oakley T, Mower J, Shimmin LC, Yim S, Honeycutt RL, Tsao H, Li W-H.  2004.  Molecular evolution of bat color vision genes. Molecular biology and evolution. 21:295–302.
Oakley TH, Cunningham CW.  2002.  Molecular phylogenetic evidence for the independent evolutionary origin of an arthropod compound eye. Proceedings of the National Academy of Sciences. 99:1426.
Lindgren A, Pankey M, Hochberg F, Oakley T.  2012.  A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment. BMC Evolutionary Biology. 12:129.
Swafford AJM, Oakley TH.  2018.  Multimodal sensorimotor system in unicellular zoospores of a fungus. Journal of Experimental Biology. 221
Gould RM, Oakley T, Goldstone JV, Dugas JC, Brady ST, Gow A.  2008.  Myelin sheaths are formed with proteins that originated in vertebrate lineages. Neuron Glia Biology. 4:137–152.
Oakley TH.  2005.  Myodocopa (Crustacea: Ostracoda) as models for evolutionary studies of light and vision: multiple origins of bioluminescence and extreme sexual dimorphism. Hydrobiologia. 538:179–192.