Publications

Found 12 results
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Picciani N, Kerlin JR, Sierra N, Swafford AJM, M Ramirez D, Roberts NG, Cannon JT, Daly M, Oakley TH.  2018.  Prolific origination of eyes in Cnidaria with co-option of non-visual opsins. Current Biology. 28:2413–2419. (2.06 MB)
M. Pankey S, Minin VN, Imholte GC, Suchard MA, Oakley TH.  2014.  Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid. Proceedings of the National Academy of Sciences.
Sakarya O, Armstrong KA, Adamska M, Adamski M, Wang I-F, Tidor B, Degnan BM, Oakley TH, Kosik KS.  2007.  A post-synaptic scaffold at the origin of the animal kingdom. PLoS One. 2:e506.
Moran P, Reed KM, Pérez J, Oakley TH, Phillips RB, Garcia-Vazquez E, Pendas AM.  1997.  Physical localization and characterization of the BglI element in the genomes of Atlantic salmon (Salmo salar L.) and brown trout (S. trutta L.). Gene. 194:9–18.
Oakley TH, Wolfe JM, Lindgren AR, Zaharoff AK.  2013.  Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement, and Pancrustacean Phylogeny. Molecular biology and evolution. 30:215–233. (1.19 MB)
Oakley TH, Phillips RB.  1999.  Phylogeny of salmonine fishes based on growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa. Molecular Phylogenetics and Evolution. 11:381–393.
Phillips RB, Oakley TH, Kocher TD.  1997.  Phylogenetic relationships among the Salmoninae based on nuclear and mitochondrial DNA sequences.. Molecular systematics of fishes. Academic Press, London.
Oakley TH.  2001.  Phylogenetic reconstruction of ancestral character states.
Cadotte MW, T Davies J, Regetz J, Kembel SW, Cleland E, Oakley TH.  2010.  Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. Ecology letters. 13:96–105.
Naughton HR, Alexandrou MA, Oakley TH, Cardinale BJ.  2015.  Phylogenetic distance does not predict competition in green algal communities. Ecosphere. 6:art116.
Domanico MJ, Phillips RB, Oakley TH.  1997.  Phylogenetic analysis of Pacific salmon (genus Oncorhynchus) using nuclear and mitochondrial DNA sequences. Canadian Journal of Fisheries and Aquatic Sciences. 54:1865–1872.
Hensley NM, Ellis EA, Gerrish GA, Torres E, Frawley JP, Oakley TH, Rivers TJ.  2019.  Phenotypic evolution shaped by current enzyme function in the bioluminescent courtship signals of sea fireflies. Proceedings of the Royal Society B. 286:20182621.