Publications

Found 104 results
[ Author(Desc)] Title Type Year
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O
Oakley TH, Plachetzki DC, Rivera AS.  2007.  Furcation, field-splitting, and the evolutionary origins of novelty in arthropod photoreceptors. Arthropod structure & development. 36:386–400.
Oakley T.  2018.  Eyes to See: The Astonishing Variety of Vision in Nature. Nature. 563:182–183.
Oakley TH.  2001.  Phylogenetic reconstruction of ancestral character states.
Oakley TH, Østman B, Wilson ACV.  2006.  Repression and loss of gene expression outpaces activation and gain in recently duplicated fly genes. Proceedings of the National Academy of Sciences. 103:11637.
Oakley TH, Cunningham CW.  2000.  Independent contrasts succeed where ancestor reconstruction fails in a known bacteriophage phylogeny. Evolution. 54:397–405.
Oakley T, Alexandrou M, Ngo R, Pankey M, Churchill C, Chen W, Lopker K.  2014.  Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system. BMC Bioinformatics. 15:230.
Oakley TH.  2003.  The eye as a replicating and diverging, modular developmental unit. TRENDS in Ecology and Evolution. 18:623–627.
Oakley TH.  2007.  A review of Gene Sharing and Evolution: The Diversity of Protein Functions, by Joram Piatigorsky. Evolution & Development. 9:514–516.
Oakley TH, Speiser DI.  2015.  How Complexity Originates: The Evolution of Animal Eyes. Annual Review of Ecology, Evolution, and Systematics. 46 (351.15 KB)
Oakley TH, Gu Z, Abouheif E, Patel NH, Li W-H.  2005.  Comparative methods for the analysis of gene-expression evolution: an example using yeast functional genomic data. Molecular biology and evolution. 22:40–50.
Oakley TH, M Pankey S.  2008.  Opening the “black box”: the genetic and biochemical basis of eye evolution. Evolution: Education and Outreach. 1:390–402. (342.38 KB)
Oakley TH, Cunningham CW.  2002.  Molecular phylogenetic evidence for the independent evolutionary origin of an arthropod compound eye. Proceedings of the National Academy of Sciences. 99:1426.
Oakley TH.  2007.  Today's multiple choice exam:(a) gene duplication;(b) structural mutation;(c) co-option;(d) regulatory mutation;(e) all of the above. Evolution & Development. 9:523–524.
Oakley TH.  2003.  Maximum likelihood models of trait evolution. Comments on Theoretical Biology. 8:609–625.

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