Type II opsins: evolutionary origin by internal domain duplication? Journal of molecular evolution. 66:417–423.. 2008.
CoMET: A Mesquite package for comparing models of continuous character evolution on phylogenies. Evolutionary Bioinformatics Online. 2:183.. 2006.
Testing Trait Evolution Models on Phylogenetic Trees. Computer Science. MS:34.. 2005.
A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment. BMC Evolutionary Biology. 12:129.. 2012.
Occurrence of Hemocyanin in Ostracod Crustaceans. Journal of Molecular Evolution. :1–9.. 2014.
Ecological interactions and coexistence are predicted by gene expression similarity in freshwater green algae. Journal of Ecology. 105:580–591.. 2017.
Experimental evidence that evolutionary relatedness does not affect the ecological mechanisms of coexistence in freshwater green algae. Ecology Letters. 16:1373–1381.. 2013.
Common Ancestry Is a Poor Predictor of Competitive Traits in Freshwater Green Algae. PloS one. 10:e0137085.. 2015.
Phylogenetic distance does not predict competition in green algal communities. Ecosphere. 6:art116.. 2015.
Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement, and Pancrustacean Phylogeny. Molecular biology and evolution. 30:215–233.. 2013.
Myodocopa (Crustacea: Ostracoda) as models for evolutionary studies of light and vision: multiple origins of bioluminescence and extreme sexual dimorphism. Hydrobiologia. 538:179–192.. 2005.
DATA FROM: Phylotranscriptomics to bring the understudied into the fold: monophyletic Ostracoda, fossil placement and pancrustacean phylogeny.. 2013.
Differential expression of duplicated opsin genes in two eyetypes of ostracod crustaceans. Journal of molecular evolution. 59:239–249.. 2004.
Repression and loss of gene expression outpaces activation and gain in recently duplicated fly genes. Proceedings of the National Academy of Sciences. 103:11637.. 2006.
Maximum likelihood models of trait evolution. Comments on Theoretical Biology. 8:609–625.. 2003.
The eye as a replicating and diverging, modular developmental unit. TRENDS in Ecology and Evolution. 18:623–627.. 2003.
Furcation and fusion: The phylogenetics of evolutionary novelty. Developmental Biology. 431:69-76.. 2017.
Independent contrasts succeed where ancestor reconstruction fails in a known bacteriophage phylogeny. Evolution. 54:397–405.. 2000.
Eyes to See: The Astonishing Variety of Vision in Nature. Nature. 563:182–183.. 2018.
Phylogeny of salmonine fishes based on growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa. Molecular Phylogenetics and Evolution. 11:381–393.. 1999.
Molecular phylogenetic evidence for the independent evolutionary origin of an arthropod compound eye. Proceedings of the National Academy of Sciences. 99:1426.. 2002.
How Complexity Originates: The Evolution of Animal Eyes. Annual Review of Ecology, Evolution, and Systematics. 46. 2015.
On homology of arthropod compound eyes. Integrative and comparative biology. 43:522–530.. 2003.