Type II opsins: evolutionary origin by internal domain duplication? Journal of molecular evolution. 66:417–423.. 2008.
CoMET: A Mesquite package for comparing models of continuous character evolution on phylogenies. Evolutionary Bioinformatics Online. 2:183.. 2006.
Testing Trait Evolution Models on Phylogenetic Trees. Computer Science. MS:34.. 2005.
A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment. BMC Evolutionary Biology. 12:129.. 2012.
Occurrence of Hemocyanin in Ostracod Crustaceans. Journal of Molecular Evolution. :1–9.. 2014.
Ecological interactions and coexistence are predicted by gene expression similarity in freshwater green algae. Journal of Ecology. 105:580–591.. 2017.
Common Ancestry Is a Poor Predictor of Competitive Traits in Freshwater Green Algae. PloS one. 10:e0137085.. 2015.
Experimental evidence that evolutionary relatedness does not affect the ecological mechanisms of coexistence in freshwater green algae. Ecology Letters. 16:1373–1381.. 2013.
Phylogenetic distance does not predict competition in green algal communities. Ecosphere. 6:art116.. 2015.
A review of Gene Sharing and Evolution: The Diversity of Protein Functions, by Joram Piatigorsky. Evolution & Development. 9:514–516.. 2007.
How Complexity Originates: The Evolution of Animal Eyes. Annual Review of Ecology, Evolution, and Systematics. 46. 2015.
Comparative methods for the analysis of gene-expression evolution: an example using yeast functional genomic data. Molecular biology and evolution. 22:40–50.. 2005.
Molecular phylogenetic evidence for the independent evolutionary origin of an arthropod compound eye. Proceedings of the National Academy of Sciences. 99:1426.. 2002.
Opening the “black box”: the genetic and biochemical basis of eye evolution. Evolution: Education and Outreach. 1:390–402.. 2008.
Today's multiple choice exam:(a) gene duplication;(b) structural mutation;(c) co-option;(d) regulatory mutation;(e) all of the above. Evolution & Development. 9:523–524.. 2007.
Maximum likelihood models of trait evolution. Comments on Theoretical Biology. 8:609–625.. 2003.
Furcation and fusion: The phylogenetics of evolutionary novelty. Developmental Biology. 431:69-76.. 2017.
Genomics and the evolutionary origins of nervous system complexity. Current opinion in genetics & development. 18:479–492.. 2008.
On homology of arthropod compound eyes. Integrative and comparative biology. 43:522–530.. 2003.
DATA FROM: Phylotranscriptomics to bring the understudied into the fold: monophyletic Ostracoda, fossil placement and pancrustacean phylogeny.. 2013.
Phylogeny of salmonine fishes based on growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa. Molecular Phylogenetics and Evolution. 11:381–393.. 1999.
Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement, and Pancrustacean Phylogeny. Molecular biology and evolution. 30:215–233.. 2013.