Publications
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2014. Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid. Proceedings of the National Academy of Sciences.
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2007. A post-synaptic scaffold at the origin of the animal kingdom. PLoS One. 2:e506.
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1997. Physical localization and characterization of the BglI element in the genomes of Atlantic salmon (Salmo salar L.) and brown trout (S. trutta L.). Gene. 194:9–18.
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2013. Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement, and Pancrustacean Phylogeny. Molecular biology and evolution. 30:215–233.
(1.19 MB)
(1.19 MB).
1999. Phylogeny of salmonine fishes based on growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa. Molecular Phylogenetics and Evolution. 11:381–393.
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2019. Phylogenetic position of Alternochelata lizardensis Kornicker, 1982 within Rutidermatidae (Ostracoda: Myodocopida), with an investigation into its green coloration. The Journal of Crustacean Biology. 39:559–566.
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2010. Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. Ecology letters. 13:96–105.
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2015. Phylogenetic distance does not predict competition in green algal communities. Ecosphere. 6:art116.
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1997. Phylogenetic analysis of Pacific salmon (genus Oncorhynchus) using nuclear and mitochondrial DNA sequences. Canadian Journal of Fisheries and Aquatic Sciences. 54:1865–1872.
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2019. Phenotypic evolution shaped by current enzyme function in the bioluminescent courtship signals of sea fireflies. Proceedings of the Royal Society B. 286:20182621.
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2014. Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system. BMC Bioinformatics. 15:230.
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2007. The origins of novel protein interactions during animal opsin evolution. PLoS One. 2:e1054.
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2014. Opsins in Limulus eyes: Characterization of three visible light-sensitive opsins unique to and co-expressed in median eye photoreceptors and a peropsin/RGR that is expressed in all eyes. The Journal of experimental biology. :jeb–116087.
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2008. Opening the “black box”: the genetic and biochemical basis of eye evolution. Evolution: Education and Outreach. 1:390–402. (342.38 KB)
(342.38 KB).
2009. Ontogeny of sexual dimorphism via tissue duplication in an ostracod (Crustacea). Evolution & Development. 11:233–243.
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2014. Ocular and Extraocular Expression of Opsins in the Rhopalium of Tripedalia cystophora (Cnidaria: Cubozoa)). Plos One. 9(6)
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2014. Occurrence of Hemocyanin in Ostracod Crustaceans. Journal of Molecular Evolution. :1–9. (1.42 MB)
(1.42 MB).
2005. New insights into the evolutionary history of photoreceptor cells. Trends in ecology & evolution. 20:465–467.
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2007. The new biology: beyond the Modern Synthesis. Biology direct. 2:30.
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2005. Myodocopa (Crustacea: Ostracoda) as models for evolutionary studies of light and vision: multiple origins of bioluminescence and extreme sexual dimorphism. Hydrobiologia. 538:179–192.
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2008. Myelin sheaths are formed with proteins that originated in vertebrate lineages. Neuron Glia Biology. 4:137–152.
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2018. Multimodal sensorimotor system in unicellular zoospores of a fungus. Journal of Experimental Biology. 221
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2021. Multi-level convergence of complex traits and the evolution of bioluminescence. Biological Reviews. 96:673–691.
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2012. A multi-gene phylogeny of Cephalopoda supports convergent morphological evolution in association with multiple habitat shifts in the marine environment. BMC Evolutionary Biology. 12:129.
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2024. A morphological basis for path-dependent evolution of visual systems. Science. 383:983–987.