Publications
Phenotypic evolution shaped by current enzyme function in the bioluminescent courtship signals of sea fireflies. Proceedings of the Royal Society B. 286:20182621.
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2019. Phylogenetic analysis of Pacific salmon (genus Oncorhynchus) using nuclear and mitochondrial DNA sequences. Canadian Journal of Fisheries and Aquatic Sciences. 54:1865–1872.
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1997. Phylogenetic distance does not predict competition in green algal communities. Ecosphere. 6:art116.
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2015. Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. Ecology letters. 13:96–105.
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2010. .
2001. Phylogenetic relationships among the Salmoninae based on nuclear and mitochondrial DNA sequences.. Molecular systematics of fishes. Academic Press, London.
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1997. Phylogeny of salmonine fishes based on growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa. Molecular Phylogenetics and Evolution. 11:381–393.
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1999. Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement, and Pancrustacean Phylogeny. Molecular biology and evolution. 30:215–233.
(1.19 MB)
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2013. 
Physical localization and characterization of the BglI element in the genomes of Atlantic salmon (Salmo salar L.) and brown trout (S. trutta L.). Gene. 194:9–18.
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1997. A post-synaptic scaffold at the origin of the animal kingdom. PLoS One. 2:e506.
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2007. Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid. Proceedings of the National Academy of Sciences.
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2014. Prolific origination of eyes in Cnidaria with co-option of non-visual opsins. Current Biology. 28:2413–2419.
(2.06 MB)
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2018. 
Reconstructing ancestral character states: a critical reappraisal. Trends in Ecology & Evolution. 13:361–366.
(136.95 KB)
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1998. 
Reconstructing ancestral genome content based on symmetrical best alignments and Dollo parsimony. Bioinformatics. 24:606.
(254.73 KB)
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2008. 
Repression and loss of gene expression outpaces activation and gain in recently duplicated fly genes. Proceedings of the National Academy of Sciences. 103:11637.
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2006. A review of Gene Sharing and Evolution: The Diversity of Protein Functions, by Joram Piatigorsky. Evolution & Development. 9:514–516.
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2007. Sequence, overproduction and purification of Vibrio proteolyticus ribosomal protein L 18 for in vitro and in vivo studies. Gene. 183:237–242.
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1996. Shared ancestry influences community stability by altering competitive interactions: evidence from a laboratory microcosm experiment using freshwater green algae. Proceedings of the Royal Society B: Biological Sciences. 280
(527.51 KB)
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2013. 
Species richness, but not phylogenetic diversity, influences community biomass production and temporal stability in a re-examination of 16 grassland biodiversity studies. Functional Ecology.
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2015. Support for the dimorphic niche hypothesis: Natural selection drives sexual eye dimorphism in ostracods. Ecology Evolution and Marine Biology. MA:42.
(625.01 KB)
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2011. 
Symbiotic organs shaped by distinct modes of genome evolution in cephalopods. Proceedings of the National Academy of Sciences. :201817322.
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2019. Testing Trait Evolution Models on Phylogenetic Trees. Computer Science. MS:34.
(834.6 KB)
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2005. 
Today's multiple choice exam:(a) gene duplication;(b) structural mutation;(c) co-option;(d) regulatory mutation;(e) all of the above. Evolution & Development. 9:523–524.
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