Publications
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2014. Ocular and Extraocular Expression of Opsins in the Rhopalium of Tripedalia cystophora (Cnidaria: Cubozoa)). Plos One. 9(6)
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2014. Opsins in Limulus eyes: Characterization of three visible light-sensitive opsins unique to and co-expressed in median eye photoreceptors and a peropsin/RGR that is expressed in all eyes. The Journal of experimental biology. :jeb–116087.
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2014. Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system. BMC Bioinformatics. 15:230.
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2014. Predictable transcriptome evolution in the convergent and complex bioluminescent organs of squid. Proceedings of the National Academy of Sciences.
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2014. Two new sympatric species of Eusarsiella (Ostracoda: Myodocopida: Sarsiellidae) from the Florida Keys with a morphological phylogeny of Sarsiellinae. Zootaxa. 3802:444–458.
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2014. Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. BMC bioinformatics. 15:350.
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2015. Common Ancestry Is a Poor Predictor of Competitive Traits in Freshwater Green Algae. PloS one. 10:e0137085.
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2015. The dynamic evolutionary history of pancrustacean eyes and opsins. Integrative and Comparative Biology. :icv100.
(5.07 MB)
(5.07 MB).
2015. Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae. Proceedings of the Royal Society B: Biological Sciences. 282:20141745.
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2015. Eye-independent, light-activated chromatophore expansion (LACE) and expression of phototransduction genes in the skin of Octopus bimaculoides. The Journal of experimental biology. 218:1513–1520.
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2015. How Complexity Originates: The Evolution of Animal Eyes. Annual Review of Ecology, Evolution, and Systematics. 46 (351.15 KB)
(351.15 KB).
2015. Phylogenetic distance does not predict competition in green algal communities. Ecosphere. 6:art116.
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2015. Species richness, but not phylogenetic diversity, influences community biomass production and temporal stability in a re-examination of 16 grassland biodiversity studies. Functional Ecology.
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2015. A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus. PloS one. 10:e0140484.
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2016. High Rates of Species Accumulation in Animals with Bioluminescent Courtship Displays. Current Biology. (1.33 MB)
(1.33 MB).
2016. The last common ancestor of most bilaterian animals possessed at least 9 opsins. Genome biology and evolution. :evw248.
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2017. Collecting and processing marine ostracods. Journal of Crustacean Biology. 37:347-352.
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2017. Ecological interactions and coexistence are predicted by gene expression similarity in freshwater green algae. Journal of Ecology. 105:580–591.
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2017. Furcation and fusion: The phylogenetics of evolutionary novelty. Developmental Biology. 431:69-76.
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2017. The Genome Sizes of Ostracod Crustaceans Correlate with Body Size and Evolutionary History, but not Environment. Journal of Heredity. 108:701-706.
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2018. Bioluminescent Signals. (2.98 MB)
(2.98 MB).
2018. Ecological engineering helps maximize function in algal oil production. Applied and environmental microbiology. :AEM–00953.
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2018. Eyes to See: The Astonishing Variety of Vision in Nature. Nature. 563:182–183.
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2018. Multimodal sensorimotor system in unicellular zoospores of a fungus. Journal of Experimental Biology. 221