Publications

Found 119 results
[ Author(Asc)] Title Type Year
A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 
F
Fritschie KJeffrey, Cardinale BJ, Alexandrou MA, Oakley TH.  2013.  Evolutionary history and the strength of species interactions: testing the phylogenetic limiting similarity hypothesis. Ecology.
Feuda R, Rota-Stabelli O, Oakley TH, Pisani D.  2014.  The comb jelly opsins and the origins of animal phototransduction. Genome biology and evolution. 6:1964–1971.
E
Ellis EA, Oakley TH.  2016.  High Rates of Species Accumulation in Animals with Bioluminescent Courtship Displays. Current Biology.  (1.33 MB)
Ellis EA, Goodheart JA, Hensley NM, González VL, Reda NJ, Rivers TJ, Morin JG, Torres E, Gerrish GA, Oakley TH.  2023.  Sexual signals persist over deep time: ancient co-option of bioluminescence for courtship displays in cypridinid ostracods. Systematic Biology. 72:264–274.
D
Drábková M, Kocot KM, Halanych KM, Oakley TH, Moroz LL, Cannon JT, Kuris A, Garcia-Vedrenne AElisa, M Pankey S, Ellis EA.  2022.  Different phylogenomic methods support monophyly of enigmatic ‘Mesozoa’(Dicyemida+ Orthonectida, Lophotrochozoa). Proceedings of the Royal Society B. 289:20220683.
Domanico MJ, Phillips RB, Oakley TH.  1997.  Phylogenetic analysis of Pacific salmon (genus Oncorhynchus) using nuclear and mitochondrial DNA sequences. Canadian Journal of Fisheries and Aquatic Sciences. 54:1865–1872.
C
Cunningham CW, Omland KE, Oakley TH.  1998.  Reconstructing ancestral character states: a critical reappraisal. Trends in Ecology & Evolution. 13:361–366. (136.95 KB)
Colbourne JK, Pfrender ME, Gilbert D, W Thomas K, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MKumar et al..  2011.  The ecoresponsive genome of Daphnia pulex. Science. 331:555.
Cohen AC, Oakley TH.  2017.  Collecting and processing marine ostracods. Journal of Crustacean Biology. 37:347-352.
CHURCHILL CELIAKC, Ellis EA, Pique A, Oakley TH.  2014.  Two new sympatric species of Eusarsiella (Ostracoda: Myodocopida: Sarsiellidae) from the Florida Keys with a morphological phylogeny of Sarsiellinae. Zootaxa. 3802:444–458.
Cadotte MW, Cardinale BJ, Oakley TH.  2008.  Evolutionary history and the effect of biodiversity on plant productivity. Proceedings of the National Academy of Sciences. 105:17012.
Cadotte MW, Cavender-Bares J, Tilman D, Oakley TH.  2009.  Using phylogenetic, functional and trait diversity to understand patterns of plant community productivity. PLoS One. 4:e5695.
Cadotte MW, T Davies J, Regetz J, Kembel SW, Cleland E, Oakley TH.  2010.  Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. Ecology letters. 13:96–105.
B
Birch S, Picciani N, Oakley T, Plachetzki D.  2023.  Cnidarians: Diversity and evolution of cnidarian visual systems. Distributed Vision: From Simple Sensors to Sophisticated Combination Eyes. :21–47.
Bielecki J, Zaharoff AK, Leung NY, Garm A, Oakley TH.  2014.  Ocular and Extraocular Expression of Opsins in the Rhopalium of Tripedalia cystophora (Cnidaria: Cubozoa)). Plos One. 9(6)
Belcaid M, Casaburi G, McAnulty SJ, Schmidbaur H, Suria AM, Moriano-Gutierrez S, M Pankey S, Oakley TH, Kremer N, Koch EJ et al..  2019.  Symbiotic organs shaped by distinct modes of genome evolution in cephalopods. Proceedings of the National Academy of Sciences. :201817322.
Battelle B-A, Kempler K, Saraf SR, Marten CE, Dugger DR, Spiser DI, Oakley TH.  2014.  Opsins in Limulus eyes: Characterization of three visible light-sensitive opsins unique to and co-expressed in median eye photoreceptors and a peropsin/RGR that is expressed in all eyes. The Journal of experimental biology. :jeb–116087.
A
Alexandrou MA, Swartz BA, Matzke NJ, Oakley TH.  2013.  Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae. Molecular Phylogenetics and Evolution. 69:514-523. (814.25 KB)
Alexandrou MA, Cardinale BJ, Hall JD, Delwiche CF, Fritschie K, Narwani A, Venail PA, Bentlage B, M Pankey S, Oakley TH.  2015.  Evolutionary relatedness does not predict competition and co-occurrence in natural or experimental communities of green algae. Proceedings of the Royal Society B: Biological Sciences. 282:20141745.

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