Publications

Found 119 results
Author Title [ Type(Asc)] Year
Journal Article
Juarez BH, Speiser DI, Oakley TH.  2019.  Context-dependent evolution of ostracod morphology along the ecogeographical gradient of ocean depth. Evolution.  (579.69 KB)
Patek SN, Oakley TH.  2003.  Comparative tests of evolutionary trade-offs in a palinurid lobster acoustic system. Evolution. 57:2082–2100.
Oakley TH, Gu Z, Abouheif E, Patel NH, Li W-H.  2005.  Comparative methods for the analysis of gene-expression evolution: an example using yeast functional genomic data. Molecular biology and evolution. 22:40–50.
Narwani A, Alexandrou MA, Herrin J, Vouaux A, Zhou C, Oakley TH, Cardinale BJ.  2015.  Common Ancestry Is a Poor Predictor of Competitive Traits in Freshwater Green Algae. PloS one. 10:e0137085.
Lee C, Blay S, Mooers AØ, Singh A, Oakley TH.  2006.  CoMET: A Mesquite package for comparing models of continuous character evolution on phylogenies. Evolutionary Bioinformatics Online. 2:183.
Feuda R, Rota-Stabelli O, Oakley TH, Pisani D.  2014.  The comb jelly opsins and the origins of animal phototransduction. Genome biology and evolution. 6:1964–1971.
Hensley NM, Rivers TJ, Gerrish GA, Saha R, Oakley TH.  2023.  Collective synchrony of mating signals modulated by ecological cues and social signals in bioluminescent sea fireflies. Proceedings of the Royal Society B. 290:20232311.
Cohen AC, Oakley TH.  2017.  Collecting and processing marine ostracods. Journal of Crustacean Biology. 37:347-352.
Plachetzki DC, Fong CR, Oakley TH.  2012.  Cnidocyte discharge is regulated by light and opsin-mediated phototransduction. BMC biology. 10:17.
Rivera AS, Ozturk N, Fahey B, Plachetzki DC, Degnan BM, Sancar A, Oakley TH.  2012.  Blue-light-receptive cryptochrome is expressed in a sponge eye lacking neurons and opsin. The Journal of experimental biology. 215:1278–1286. (1.07 MB)
Stanger-Hall KF, Oakley TH.  2018.  Bioluminescent Signals.  (2.98 MB)
Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier MEA, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U et al..  2010.  The Amphimedon queenslandica genome and the evolution of animal complexity. Nature. 466:720–726.
Reed KM, Oakley TH, Phillips RB.  1997.  An AluI fragment isolated from lake trout (Salvelinus namaycush), maps to the intergenic spacer region of the rDNA cistron. Gene. 186:7–11.
Database
Porter ML, Speiser DI, Zaharoff AK, Caldwell RL, Cronin TW, Oakley TH.  2013.  DATA FROM The evolution of complexity in the visual systems of stomatopods: insights from transcriptomics.
Oakley TH, Wolfe JM, Lindgren AR, Zaharoff AK.  2013.  DATA FROM: Phylotranscriptomics to bring the understudied into the fold: monophyletic Ostracoda, fossil placement and pancrustacean phylogeny.
Speiser DI, Lampe RI, Lovdahl VR, Carrillo-Zazueta B, Rivera AS, Oakley TH.  2013.  DATA FROM: Evasion of predators contributes to the maintenance of male eyes in sexually dimorphic Euphilomedes ostracods (Crustacea).
Book Chapter
Phillips RB, Oakley TH, Kocher TD.  1997.  Phylogenetic relationships among the Salmoninae based on nuclear and mitochondrial DNA sequences.. Molecular systematics of fishes. Academic Press, London.
Oakley TH.  2009.  A Critique of Experimental Phylogenetics.
Birch S, Picciani N, Oakley T, Plachetzki D.  2023.  Cnidarians: Diversity and evolution of cnidarian visual systems. Distributed Vision: From Simple Sensors to Sophisticated Combination Eyes. :21–47.

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