Publications

Found 85 results
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Battelle B-A, Kempler K, Saraf SR, Marten CE, Dugger DR, Spiser DI, Oakley TH.  2014.  Opsins in Limulus eyes: Characterization of three visible light-sensitive opsins unique to and co-expressed in median eye photoreceptors and a peropsin/RGR that is expressed in all eyes. The Journal of experimental biology. :jeb–116087.
Oakley TH, M Pankey S.  2008.  Opening the “black box”: the genetic and biochemical basis of eye evolution. Evolution: Education and Outreach. 1:390–402. (342.38 KB)
Rivera AS, Oakley TH.  2009.  Ontogeny of sexual dimorphism via tissue duplication in an ostracod (Crustacea). Evolution & Development. 11:233–243.
Marxen JC, Pick C, Oakley TH, Burmester T.  2014.  Occurrence of Hemocyanin in Ostracod Crustaceans. Journal of Molecular Evolution. :1–9. (1.42 MB)
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Plachetzki DC, Serb JM, Oakley TH.  2005.  New insights into the evolutionary history of photoreceptor cells. Trends in ecology & evolution. 20:465–467.
Rose MR, Oakley TH, .  2007.  The new biology: beyond the Modern Synthesis. Biology direct. 2:30.
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Oakley TH.  2005.  Myodocopa (Crustacea: Ostracoda) as models for evolutionary studies of light and vision: multiple origins of bioluminescence and extreme sexual dimorphism. Hydrobiologia. 538:179–192.
Lau ES, Oakley TH.  2021.  Multi-level convergence of complex traits and the evolution of bioluminescence. Biological Reviews. 96:673–691.
Varney RM, Speiser DI, Cannon JT, Aguilar MA, Eernisse DJ, Oakley TH.  2024.  A morphological basis for path-dependent evolution of visual systems. Science. 383:983–987.
Oakley TH, Cunningham CW.  2002.  Molecular phylogenetic evidence for the independent evolutionary origin of an arthropod compound eye. Proceedings of the National Academy of Sciences. 99:1426.
Tanner AR, Fuchs D, Winkelmann IE, M Gilbert TP, M Pankey S, Ribeiro ÂM, Kocot KM, Halanych KM, Oakley TH, da Fonseca RR et al..  2017.  Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution. Proc. R. Soc. B.
Oakley TH.  2003.  Maximum likelihood models of trait evolution. Comments on Theoretical Biology. 8:609–625.
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Mitani Y, Yasuno R, Futahashi R, Oakley TH, Ohmiya Y.  2019.  Luciferase gene of a Caribbean fireworm (Syllidae) from Puerto Rico. Scientific Reports. 9:13015.
Swafford AJM, Oakley TH.  2019.  Light-induced stress as a primary evolutionary driver of eye origins. Integrative and comparative biology. 59:739–750.
Picciani N, Kerlin JR, Jindrich K, Hensley NM, Gold DA, Oakley TH.  2021.  Light modulated cnidocyte discharge predates the origins of eyes in Cnidaria. Ecology and evolution. 11:3933–3940.
M Ramirez D, Pairett AN, M Pankey S, Serb JM, Speiser DI, Swafford AJ, Oakley TH.  2016.  The last common ancestor of most bilaterian animals possessed at least 9 opsins. Genome biology and evolution. :evw248.
Goodheart JA, Minsky G, Brynjegard-Bialik MN, Drummond MS, J Munoz D, Fallon TR, Schultz DT, Weng J-K, Torres E, Oakley TH.  2020.  Laboratory culture of the California Sea Firefly Vargula tsujii (Ostracoda: Cypridinidae): Developing a model system for the evolution of marine bioluminescence. Scientific Reports. 10:10443.
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Plachetzki DC, Oakley TH.  2007.  Key transitions during the evolution of animal phototransduction: novelty,“tree-thinking,” co-option, and co-duplication. Integrative and Comparative Biology. 47:759–769.
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Oakley TH.  2008.  Jay Hosler, An Evolutionary Novelty: Optical Allusions. Evolution: Education and Outreach. 1:548–551. (212.35 KB)
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Oakley TH, Cunningham CW.  2000.  Independent contrasts succeed where ancestor reconstruction fails in a known bacteriophage phylogeny. Evolution. 54:397–405.
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Oakley TH, Speiser DI.  2015.  How Complexity Originates: The Evolution of Animal Eyes. Annual Review of Ecology, Evolution, and Systematics. 46 (351.15 KB)
Oakley TH.  2003.  On homology of arthropod compound eyes. Integrative and comparative biology. 43:522–530.
Ellis EA, Oakley TH.  2016.  High Rates of Species Accumulation in Animals with Bioluminescent Courtship Displays. Current Biology.  (1.33 MB)
Serb JM, Oakley TH.  2005.  Hierarchical phylogenetics as a quantitative analytical framework for evolutionary developmental biology. Bioessays. 27:1158–1166.
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Oakley TH, Rivera AS.  2008.  Genomics and the evolutionary origins of nervous system complexity. Current opinion in genetics & development. 18:479–492.

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