Publications

Found 85 results
Author Title [ Type(Desc)] Year
Filters: Author is Oakley, Todd H  [Clear All Filters]
Journal Article
Reed KM, Oakley TH, Phillips RB.  1997.  An AluI fragment isolated from lake trout (Salvelinus namaycush), maps to the intergenic spacer region of the rDNA cistron. Gene. 186:7–11.
Stanger-Hall KF, Oakley TH.  2018.  Bioluminescent Signals.  (2.98 MB)
Rivera AS, Ozturk N, Fahey B, Plachetzki DC, Degnan BM, Sancar A, Oakley TH.  2012.  Blue-light-receptive cryptochrome is expressed in a sponge eye lacking neurons and opsin. The Journal of experimental biology. 215:1278–1286. (1.07 MB)
Plachetzki DC, Fong CR, Oakley TH.  2012.  Cnidocyte discharge is regulated by light and opsin-mediated phototransduction. BMC biology. 10:17.
Hensley NM, Rivers TJ, Gerrish GA, Saha R, Oakley TH.  2023.  Collective synchrony of mating signals modulated by ecological cues and social signals in bioluminescent sea fireflies. Proceedings of the Royal Society B. 290:20232311.
Feuda R, Rota-Stabelli O, Oakley TH, Pisani D.  2014.  The comb jelly opsins and the origins of animal phototransduction. Genome biology and evolution. 6:1964–1971.
Lee C, Blay S, Mooers AØ, Singh A, Oakley TH.  2006.  CoMET: A Mesquite package for comparing models of continuous character evolution on phylogenies. Evolutionary Bioinformatics Online. 2:183.
Oakley TH, Gu Z, Abouheif E, Patel NH, Li W-H.  2005.  Comparative methods for the analysis of gene-expression evolution: an example using yeast functional genomic data. Molecular biology and evolution. 22:40–50.
Juarez BH, Speiser DI, Oakley TH.  2019.  Context-dependent evolution of ostracod morphology along the ecogeographical gradient of ocean depth. Evolution.  (579.69 KB)
Vöcking O, Macias-Muñoz A, Jaeger SJ, Oakley TH.  2022.  Deep diversity: extensive variation in the components of complex visual systems across animals. Cells. 11:3966.
Drábková M, Kocot KM, Halanych KM, Oakley TH, Moroz LL, Cannon JT, Kuris A, Garcia-Vedrenne AElisa, M Pankey S, Ellis EA.  2022.  Different phylogenomic methods support monophyly of enigmatic ‘Mesozoa’(Dicyemida+ Orthonectida, Lophotrochozoa). Proceedings of the Royal Society B. 289:20220683.
Oakley TH, Huber DR.  2004.  Differential expression of duplicated opsin genes in two eyetypes of ostracod crustaceans. Journal of molecular evolution. 59:239–249.
Syme AE, Oakley TH.  2012.  Dispersal between shallow and abyssal seas and evolutionary loss and regain of compound eyes in cylindroleberidid ostracods: conflicting conclusions from different comparative methods. Systematic biology. 61:314–336. (1.27 MB)
Henze MJ, Oakley TH.  2015.  The dynamic evolutionary history of pancrustacean eyes and opsins. Integrative and Comparative Biology. :icv100. (5.07 MB)
Jackrel SL, Narwani A, Bentlage B, Levine RB, Hietala DC, Savage PE, Oakley TH, Denef VJ, Cardinale BJ.  2018.  Ecological engineering helps maximize function in algal oil production. Applied and environmental microbiology. :AEM–00953.
Narwani A, Bentlage B, Alexandrou MA, Fritschie KJ, Delwiche C, Oakley TH, Cardinale BJ.  2017.  Ecological interactions and coexistence are predicted by gene expression similarity in freshwater green algae. Journal of Ecology. 105:580–591.
Colbourne JK, Pfrender ME, Gilbert D, W Thomas K, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MKumar et al..  2011.  The ecoresponsive genome of Daphnia pulex. Science. 331:555.
Tinn O, Oakley TH.  2008.  Erratic rates of molecular evolution and incongruence of fossil and molecular divergence time estimates in Ostracoda (Crustacea). Molecular phylogenetics and evolution. 48:157–167.
Lum KE, Syme AE, Schwab AK, Oakley TH.  2008.  Euphilomedes chupacabra (Ostracoda: Myodocopida: Philomedidae), a new demersal marine species from coastal Puerto Rico with male-biased vespertine swimming activity. Zootaxa. 1684:35–57. (954.14 KB)
Speiser DI, Lampe RI, Lovdahl VR, Carrillo-Zazueta B, Rivera AS, Oakley TH.  2013.  Evasion of Predators Contributes to the Maintenance of Male Eyes in Sexually Dimorphic Euphilomedes ostracods (Crustacea). Integrative and comparative biology. 53:78–88. (254.54 KB)
Tong D, Rozas NS, Oakley TH, Mitchell J, Colley NJ, McFall-Ngai MJ.  2009.  Evidence for light perception in a bioluminescent organ. Proceedings of the National Academy of Sciences. 106:9836.
Porter ML, Speiser DI, Zaharoff AK, Caldwell RL, Cronin TW, Oakley TH.  2013.  The Evolution of Complexity in the Visual Systems of Stomatopods: Insights from Transcriptomics. Integrative and comparative biology. 53:39–49.
Plachetzki DC, Fong CR, Oakley TH.  2010.  The evolution of phototransduction from an ancestral cyclic nucleotide gated pathway. Proceedings of the Royal Society B: Biological Sciences. 277:1963.
Cadotte MW, Cardinale BJ, Oakley TH.  2008.  Evolutionary history and the effect of biodiversity on plant productivity. Proceedings of the National Academy of Sciences. 105:17012.

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