Found 119 results
Author Title [ Type(Asc)] Year
Journal Article
Oakley TH, Cunningham CW.  2002.  Molecular phylogenetic evidence for the independent evolutionary origin of an arthropod compound eye. Proceedings of the National Academy of Sciences. 99:1426.
Wang D, Oakley T, Mower J, Shimmin LC, Yim S, Honeycutt RL, Tsao H, Li W-H.  2004.  Molecular evolution of bat color vision genes. Molecular biology and evolution. 21:295–302.
Tanner AR, Fuchs D, Winkelmann IE, M Gilbert TP, M Pankey S, Ribeiro ÂM, Kocot KM, Halanych KM, Oakley TH, da Fonseca RR et al..  2017.  Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution. Proc. R. Soc. B.
Oakley TH.  2003.  Maximum likelihood models of trait evolution. Comments on Theoretical Biology. 8:609–625.
Mitani Y, Yasuno R, Futahashi R, Oakley TH, Ohmiya Y.  2019.  Luciferase gene of a Caribbean fireworm (Syllidae) from Puerto Rico. Scientific Reports. 9:13015.
Swafford AJM, Oakley TH.  2019.  Light-induced stress as a primary evolutionary driver of eye origins. Integrative and comparative biology. 59:739–750.
Picciani N, Kerlin JR, Jindrich K, Hensley NM, Gold DA, Oakley TH.  2021.  Light modulated cnidocyte discharge predates the origins of eyes in Cnidaria. Ecology and evolution. 11:3933–3940.
M Ramirez D, Pairett AN, M Pankey S, Serb JM, Speiser DI, Swafford AJ, Oakley TH.  2016.  The last common ancestor of most bilaterian animals possessed at least 9 opsins. Genome biology and evolution. :evw248.
Goodheart JA, Minsky G, Brynjegard-Bialik MN, Drummond MS, J Munoz D, Fallon TR, Schultz DT, Weng J-K, Torres E, Oakley TH.  2020.  Laboratory culture of the California Sea Firefly Vargula tsujii (Ostracoda: Cypridinidae): Developing a model system for the evolution of marine bioluminescence. Scientific Reports. 10:10443.
Plachetzki DC, Oakley TH.  2007.  Key transitions during the evolution of animal phototransduction: novelty,“tree-thinking,” co-option, and co-duplication. Integrative and Comparative Biology. 47:759–769.
Oakley TH.  2008.  Jay Hosler, An Evolutionary Novelty: Optical Allusions. Evolution: Education and Outreach. 1:548–551. (212.35 KB)
Venail PA, Narwani A, Fritschie K, Alexandrou MA, Oakley TH, Cardinale BJ.  2014.  The influence of phylogenetic relatedness on species interactions among freshwater green algae in a mesocosm experiment. Journal of Ecology. :n/a–n/a.
Oakley TH, Cunningham CW.  2000.  Independent contrasts succeed where ancestor reconstruction fails in a known bacteriophage phylogeny. Evolution. 54:397–405.
Oakley TH, Speiser DI.  2015.  How Complexity Originates: The Evolution of Animal Eyes. Annual Review of Ecology, Evolution, and Systematics. 46 (351.15 KB)
Oakley TH.  2003.  On homology of arthropod compound eyes. Integrative and comparative biology. 43:522–530.
Ellis EA, Oakley TH.  2016.  High Rates of Species Accumulation in Animals with Bioluminescent Courtship Displays. Current Biology.  (1.33 MB)
Serb JM, Oakley TH.  2005.  Hierarchical phylogenetics as a quantitative analytical framework for evolutionary developmental biology. Bioessays. 27:1158–1166.
Scientists GIGACommunity.  2014.  The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes. Journal of Heredity. 105:1-18.
Oakley TH, Rivera AS.  2008.  Genomics and the evolutionary origins of nervous system complexity. Current opinion in genetics & development. 18:479–492.
Jeffery NW, Ellis EA, Oakley TH, T Gregory R.  2017.  The Genome Sizes of Ostracod Crustaceans Correlate with Body Size and Evolutionary History, but not Environment. Journal of Heredity. 108:701-706.
Alexandrou MA, Swartz BA, Matzke NJ, Oakley TH.  2013.  Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae. Molecular Phylogenetics and Evolution. 69:514-523. (814.25 KB)
Rivera A, M Pankey S, Plachetzki D, Villacorta C, Syme A, Serb J, Omilian A, Oakley T.  2010.  Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach. BMC evolutionary biology. 10:123.
Oakley TH, Plachetzki DC, Rivera AS.  2007.  Furcation, field-splitting, and the evolutionary origins of novelty in arthropod photoreceptors. Arthropod structure & development. 36:386–400.
Oakley TH.  2017.  Furcation and fusion: The phylogenetics of evolutionary novelty. Developmental Biology. 431:69-76.
Peyer SM, M Pankey S, Oakley TH, McFall-Ngai MJ.  2014.  Eye-specification genes in the bacterial light organ of the bobtail squid Euprymna scolopes and their expression in response to symbiont cues. Mechanisms of development. 131:111-126. (3.54 MB)