The origins of novel protein interactions during animal opsin evolution. PLoS One. 2:e1054.. 2007.
A post-synaptic scaffold at the origin of the animal kingdom. PLoS One. 2:e506.. 2007.
A review of Gene Sharing and Evolution: The Diversity of Protein Functions, by Joram Piatigorsky. Evolution & Development. 9:514–516.. 2007.
Today's multiple choice exam:(a) gene duplication;(b) structural mutation;(c) co-option;(d) regulatory mutation;(e) all of the above. Evolution & Development. 9:523–524.. 2007.
CoMET: A Mesquite package for comparing models of continuous character evolution on phylogenies. Evolutionary Bioinformatics Online. 2:183.. 2006.
Repression and loss of gene expression outpaces activation and gain in recently duplicated fly genes. Proceedings of the National Academy of Sciences. 103:11637.. 2006.
Comparative methods for the analysis of gene-expression evolution: an example using yeast functional genomic data. Molecular biology and evolution. 22:40–50.. 2005.
Hierarchical phylogenetics as a quantitative analytical framework for evolutionary developmental biology. Bioessays. 27:1158–1166.. 2005.
Myodocopa (Crustacea: Ostracoda) as models for evolutionary studies of light and vision: multiple origins of bioluminescence and extreme sexual dimorphism. Hydrobiologia. 538:179–192.. 2005.
New insights into the evolutionary history of photoreceptor cells. Trends in ecology & evolution. 20:465–467.. 2005.
Testing Trait Evolution Models on Phylogenetic Trees. Computer Science. MS:34.. 2005.
Differential expression of duplicated opsin genes in two eyetypes of ostracod crustaceans. Journal of molecular evolution. 59:239–249.. 2004.
Molecular evolution of bat color vision genes. Molecular biology and evolution. 21:295–302.. 2004.
Comparative tests of evolutionary trade-offs in a palinurid lobster acoustic system. Evolution. 57:2082–2100.. 2003.
The eye as a replicating and diverging, modular developmental unit. TRENDS in Ecology and Evolution. 18:623–627.. 2003.
On homology of arthropod compound eyes. Integrative and comparative biology. 43:522–530.. 2003.
Maximum likelihood models of trait evolution. Comments on Theoretical Biology. 8:609–625.. 2003.
Molecular phylogenetic evidence for the independent evolutionary origin of an arthropod compound eye. Proceedings of the National Academy of Sciences. 99:1426.. 2002.
Phylogeny of salmonine fishes based on growth hormone introns: Atlantic (Salmo) and Pacific (Oncorhynchus) salmon are not sister taxa. Molecular Phylogenetics and Evolution. 11:381–393.. 1999.
Reconstructing ancestral character states: a critical reappraisal. Trends in Ecology & Evolution. 13:361–366.. 1998.
An AluI fragment isolated from lake trout (Salvelinus namaycush), maps to the intergenic spacer region of the rDNA cistron. Gene. 186:7–11.. 1997.
Phylogenetic analysis of Pacific salmon (genus Oncorhynchus) using nuclear and mitochondrial DNA sequences. Canadian Journal of Fisheries and Aquatic Sciences. 54:1865–1872.. 1997.
Phylogenetic relationships among the Salmoninae based on nuclear and mitochondrial DNA sequences.. Molecular systematics of fishes. Academic Press, London.. 1997.