Publications

Found 44 results
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Journal Article
Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier MEA, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U et al..  2010.  The Amphimedon queenslandica genome and the evolution of animal complexity. Nature. 466:720–726.
Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier MEA, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U et al..  2010.  The Amphimedon queenslandica genome and the evolution of animal complexity. Nature. 466:720–726.
Stanger-Hall KF, Oakley TH.  2018.  Bioluminescent Signals.  (2.98 MB)
Rivera AS, Ozturk N, Fahey B, Plachetzki DC, Degnan BM, Sancar A, Oakley TH.  2012.  Blue-light-receptive cryptochrome is expressed in a sponge eye lacking neurons and opsin. The Journal of experimental biology. 215:1278–1286. (1.07 MB)
Lee C, Blay S, Mooers AØ, Singh A, Oakley TH.  2006.  CoMET: A Mesquite package for comparing models of continuous character evolution on phylogenies. Evolutionary Bioinformatics Online. 2:183.
Juarez BH, Speiser DI, Oakley TH.  2019.  Context-dependent evolution of ostracod morphology along the ecogeographical gradient of ocean depth. Evolution.  (579.69 KB)
Syme AE, Oakley TH.  2012.  Dispersal between shallow and abyssal seas and evolutionary loss and regain of compound eyes in cylindroleberidid ostracods: conflicting conclusions from different comparative methods. Systematic biology. 61:314–336. (1.27 MB)
Jackrel SL, Narwani A, Bentlage B, Levine RB, Hietala DC, Savage PE, Oakley TH, Denef VJ, Cardinale BJ.  2018.  Ecological engineering helps maximize function in algal oil production. Applied and environmental microbiology. :AEM–00953.
Lum KE, Syme AE, Schwab AK, Oakley TH.  2008.  Euphilomedes chupacabra (Ostracoda: Myodocopida: Philomedidae), a new demersal marine species from coastal Puerto Rico with male-biased vespertine swimming activity. Zootaxa. 1684:35–57. (954.14 KB)
Lum KE, Syme AE, Schwab AK, Oakley TH.  2008.  Euphilomedes chupacabra (Ostracoda: Myodocopida: Philomedidae), a new demersal marine species from coastal Puerto Rico with male-biased vespertine swimming activity. Zootaxa. 1684:35–57. (954.14 KB)
Speiser DI, Lampe RI, Lovdahl VR, Carrillo-Zazueta B, Rivera AS, Oakley TH.  2013.  Evasion of Predators Contributes to the Maintenance of Male Eyes in Sexually Dimorphic Euphilomedes ostracods (Crustacea). Integrative and comparative biology. 53:78–88. (254.54 KB)
Porter ML, Speiser DI, Zaharoff AK, Caldwell RL, Cronin TW, Oakley TH.  2013.  The Evolution of Complexity in the Visual Systems of Stomatopods: Insights from Transcriptomics. Integrative and comparative biology. 53:39–49.
Sakarya O, Conaco C, Eğecioğlu Ö, Solla SA, Oakley TH, Kosik KS.  2010.  Evolutionary expansion and specialization of the PDZ domains. Molecular biology and evolution. 27:1058–1069.
Sakarya O, Conaco C, Eğecioğlu Ö, Solla SA, Oakley TH, Kosik KS.  2010.  Evolutionary expansion and specialization of the PDZ domains. Molecular biology and evolution. 27:1058–1069.
Rivera A, M Pankey S, Plachetzki D, Villacorta C, Syme A, Serb J, Omilian A, Oakley T.  2010.  Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach. BMC evolutionary biology. 10:123.
Rivera A, M Pankey S, Plachetzki D, Villacorta C, Syme A, Serb J, Omilian A, Oakley T.  2010.  Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach. BMC evolutionary biology. 10:123.
Alexandrou MA, Swartz BA, Matzke NJ, Oakley TH.  2013.  Genome duplication and multiple evolutionary origins of complex migratory behavior in Salmonidae. Molecular Phylogenetics and Evolution. 69:514-523. (814.25 KB)
Scientists GIGACommunity.  2014.  The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes. Journal of Heredity. 105:1-18.
Serb JM, Oakley TH.  2005.  Hierarchical phylogenetics as a quantitative analytical framework for evolutionary developmental biology. Bioessays. 27:1158–1166.
Oakley TH, Speiser DI.  2015.  How Complexity Originates: The Evolution of Animal Eyes. Annual Review of Ecology, Evolution, and Systematics. 46 (351.15 KB)
M Ramirez D, Pairett AN, M Pankey S, Serb JM, Speiser DI, Swafford AJ, Oakley TH.  2016.  The last common ancestor of most bilaterian animals possessed at least 9 opsins. Genome biology and evolution. :evw248.
M Ramirez D, Pairett AN, M Pankey S, Serb JM, Speiser DI, Swafford AJ, Oakley TH.  2016.  The last common ancestor of most bilaterian animals possessed at least 9 opsins. Genome biology and evolution. :evw248.
M Ramirez D, Pairett AN, M Pankey S, Serb JM, Speiser DI, Swafford AJ, Oakley TH.  2016.  The last common ancestor of most bilaterian animals possessed at least 9 opsins. Genome biology and evolution. :evw248.

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