Publications

Found 14 results
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Syme AE, Oakley TH.  2012.  Dispersal between shallow and abyssal seas and evolutionary loss and regain of compound eyes in cylindroleberidid ostracods: conflicting conclusions from different comparative methods. Systematic biology. 61:314–336. (1.27 MB)
Swafford AJM, Oakley TH.  2018.  Multimodal sensorimotor system in unicellular zoospores of a fungus. Journal of Experimental Biology. 221
Stanger-Hall KF, Oakley TH.  2018.  Bioluminescent Signals.  (2.98 MB)
Stahl BA, Gross JB, Speiser DI, Oakley TH, Patel NH, Gould DB, Protas ME.  2015.  A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus. PloS one. 10:e0140484.
Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier MEA, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U et al..  2010.  The Amphimedon queenslandica genome and the evolution of animal complexity. Nature. 466:720–726.
Speiser DI, Lampe RI, Lovdahl VR, Carrillo-Zazueta B, Rivera AS, Oakley TH.  2013.  DATA FROM: Evasion of predators contributes to the maintenance of male eyes in sexually dimorphic Euphilomedes ostracods (Crustacea).
Speiser DI, M Pankey S, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR et al..  2014.  Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. BMC bioinformatics. 15:350.
Speiser DI, Lampe RI, Lovdahl VR, Carrillo-Zazueta B, Rivera AS, Oakley TH.  2013.  Evasion of Predators Contributes to the Maintenance of Male Eyes in Sexually Dimorphic Euphilomedes ostracods (Crustacea). Integrative and comparative biology. 53:78–88. (254.54 KB)
Setterquist RA, G Smith K, Oakley TH, Lee Y-H, Fox GE.  1996.  Sequence, overproduction and purification of Vibrio proteolyticus ribosomal protein L 18 for in vitro and in vivo studies. Gene. 183:237–242.
Serb JM, Oakley TH.  2005.  Hierarchical phylogenetics as a quantitative analytical framework for evolutionary developmental biology. Bioessays. 27:1158–1166.
Scientists GIGACommunity.  2014.  The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes. Journal of Heredity. 105:1-18.
Sakarya O, Conaco C, Eğecioğlu Ö, Solla SA, Oakley TH, Kosik KS.  2010.  Evolutionary expansion and specialization of the PDZ domains. Molecular biology and evolution. 27:1058–1069.
Sakarya O, Armstrong KA, Adamska M, Adamski M, Wang I-F, Tidor B, Degnan BM, Oakley TH, Kosik KS.  2007.  A post-synaptic scaffold at the origin of the animal kingdom. PLoS One. 2:e506.
Sakarya O, Kosik KS, Oakley TH.  2008.  Reconstructing ancestral genome content based on symmetrical best alignments and Dollo parsimony. Bioinformatics. 24:606. (254.73 KB)