Publications
Molecular evolution of bat color vision genes. Molecular biology and evolution. 21:295–302.
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2004. The influence of phylogenetic relatedness on species interactions among freshwater green algae in a mesocosm experiment. Journal of Ecology. :n/a–n/a.
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2014. Species richness, but not phylogenetic diversity, influences community biomass production and temporal stability in a re-examination of 16 grassland biodiversity studies. Functional Ecology.
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2015. Shared ancestry influences community stability by altering competitive interactions: evidence from a laboratory microcosm experiment using freshwater green algae. Proceedings of the Royal Society B: Biological Sciences. 280
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2013. 
Evidence for light perception in a bioluminescent organ. Proceedings of the National Academy of Sciences. 106:9836.
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2009. Erratic rates of molecular evolution and incongruence of fossil and molecular divergence time estimates in Ostracoda (Crustacea). Molecular phylogenetics and evolution. 48:157–167.
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2017. Dispersal between shallow and abyssal seas and evolutionary loss and regain of compound eyes in cylindroleberidid ostracods: conflicting conclusions from different comparative methods. Systematic biology. 61:314–336.
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2012. 
Multimodal sensorimotor system in unicellular zoospores of a fungus. Journal of Experimental Biology. 221
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2018. Bioluminescent Signals.
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2018. 
A Transcriptomic Analysis of Cave, Surface, and Hybrid Isopod Crustaceans of the Species Asellus aquaticus. PloS one. 10:e0140484.
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2015. The Amphimedon queenslandica genome and the evolution of animal complexity. Nature. 466:720–726.
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2010. Evasion of Predators Contributes to the Maintenance of Male Eyes in Sexually Dimorphic Euphilomedes ostracods (Crustacea). Integrative and comparative biology. 53:78–88.
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2013. 
Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms. BMC bioinformatics. 15:350.
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2013. Sequence, overproduction and purification of Vibrio proteolyticus ribosomal protein L 18 for in vitro and in vivo studies. Gene. 183:237–242.
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1996. Hierarchical phylogenetics as a quantitative analytical framework for evolutionary developmental biology. Bioessays. 27:1158–1166.
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2005. The Global Invertebrate Genomics Alliance (GIGA): Developing Community Resources to Study Diverse Invertebrate Genomes. Journal of Heredity. 105:1-18.
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2014. Evolutionary expansion and specialization of the PDZ domains. Molecular biology and evolution. 27:1058–1069.
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2010. A post-synaptic scaffold at the origin of the animal kingdom. PLoS One. 2:e506.
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2007. Reconstructing ancestral genome content based on symmetrical best alignments and Dollo parsimony. Bioinformatics. 24:606.
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2008. 
The new biology: beyond the Modern Synthesis. Biology direct. 2:30.
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2007. Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach. BMC evolutionary biology. 10:123.
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2010. Ontogeny of sexual dimorphism via tissue duplication in an ostracod (Crustacea). Evolution & Development. 11:233–243.
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2009. Blue-light-receptive cryptochrome is expressed in a sponge eye lacking neurons and opsin. The Journal of experimental biology. 215:1278–1286.
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2012. 